Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq210 295 1e-75 >seq210 Length=3885 Score = 295 bits (326), Expect = 1e-75 Identities = 324/431 (75%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 11892 CTGCCGGTGCAGTAAAGCTGGCAGCGGCAACCGCGCCGGGAGGGCGGAAGGTCAACATTA 11951 ||||||| || | |||||||||||| || || | || || ||| || || | | | Sbjct 3885 CTGCCGGAGCCGCAAAGCTGGCAGCCGCCACTGTCCCCGGCGGGAAAAAAGTAACCCTGT 3826 Query 11952 CCACGATGGCCGTCGGGGATGGCGGTGGTAAATTGCCTGTCCCGGATGCCGGACAGACCG 12011 | | |||||||| || || || ||| |||||||| || |||||||| || ||||| Sbjct 3825 CTGCAATGGCCGTGGGTGACGGTAATGGCAAATTGCCGGTGCCGGATGCTGGTCAGACGA 3766 Query 12012 GGCTTATCCACGAAGTCTGGCGACATGCGCTGAACAAAATCAGCCAGGACAAACGAAACA 12071 || | || || |||||||| || || ||||| ||| ||||| ||| || || | Sbjct 3765 AACTGGTGCATGAGGTCTGGCGTCACGCCCTGAATAAAGTCAGCGTGGATAACAAGAATA 3706 Query 12072 GTAATTATATTATCGCAGAGCTGGTTATTCCGCCGGAGGTGGGCGGTTTCTGGATGCGAG 12131 || ||||| | || || |||||| | ||||| || |||||||| ||||||||||| | Sbjct 3705 AAAACTATATCGTGGCTGAACTGGTTGTACCGCCAGAAGTGGGCGGCTTCTGGATGCGTG 3646 Query 12132 AGCTTGGCCTGTACGATGATGCGGGAACGTTAATTGCCGTGGCGAACATGGCCGAAAGTT 12191 | ||||| ||||| || ||||| ||||| | ||||| || || ||||||| ||||| | Sbjct 3645 AACTTGGTCTGTATGACGATGCCGGAACACTGATTGCGGTCGCTAACATGGTAGAAAGCT 3586 Query 12192 ATAAACCTACCCTTGCCGAAGGCTCAGGGCGTTCGCAGACCTGCCGCATGGTCATCATCG 12251 |||| ||| || || |||||||| |||||| ||||||||||||||||||| || || | Sbjct 3585 ATAAGCCTGAACTGGCTGAAGGCTCCGGGCGTGCGCAGACCTGCCGCATGGTTATTATTG 3526 Query 12252 TCAGCAGTGTGGCCTCAGTGGAGCTGACCATTGACACCACAACGGTGATGGCGACGCAGG 12311 |||| | ||||| || || ||||||| ||||| ||| ||||||||||||||||||| Sbjct 3525 TCAGTAACGTGGCGTCTGTTGAGCTGAGTATTGATGCCAGCACGGTGATGGCGACGCAGG 3466 Query 12312 ATTACGTTGAT 12322 ||||||| ||| Sbjct 3465 ATTACGTCGAT 3455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104462647188840