Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq155 123 3e-23 >seq155 Length=4151 Score = 123 bits (136), Expect = 3e-23 Identities = 190/271 (70%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 6963 CCAAGGACATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGT 7022 ||||| ||| | | ||| | |||||| || || || | || | |||||||| || Sbjct 3627 CCAAGCTCATGCCTAAAACAGTATCACCTGGGTTAAGTAAAGCAAGATAAACTGCTGAGT 3568 Query 7023 TTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAG 7082 ||||||| ||||| | ||| || ||||| ||||| | | || ||| | | |||||| Sbjct 3567 TTGCTTGAGAACCTGCATGTGGCTGAACATTTGCATAGTCAGCACCAAATAATGCTTTAG 3508 Query 7083 CACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTT 7142 |||| || || |||| | ||||| |||| | | | | || ||||||||||| || | Sbjct 3507 CACGATCGATCGCCAATTGTTCGATCACATCAACATATTCACAACCGCCATAATAGCGCT 3448 Query 7143 TGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACAT 7202 |||| || || || || ||||| ||||| || | | || || ||||||| ||||||| Sbjct 3447 TGCCAGGGTAACCTTCCGCATATTTGTTAGTGAGTTTTGACCCTTGTGCTTCCATAACAG 3388 Query 7203 CGTCTGACACATAGTTTTCGGACGCAATCAA 7233 | ||| ||||||||| || || || || Sbjct 3387 CTGGTGAGCAATAGTTTTCAGATGCGATTAA 3357 Score = 105 bits (116), Expect = 7e-18 Identities = 173/246 (70%), Gaps = 14/246 (6%) Strand=Plus/Minus Query 6482 GCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATA 6541 ||||| ||| |||| |||||| |||||||| |||||| | || |||||||| || Sbjct 4099 GCTTCTTTAAAGCAAATTGCTTTTGCTGCGATCGCATGAACCAATGGACCGCCTTGGTTA 4040 Query 6542 CCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCAT---CGTTAGTAAGAATG 6598 |||||||| | |||||| | | ||| || | || || | | | || | ||| || Sbjct 4039 CCCGGGAATACAGCAGACTGAAGTTTTTTCTCAATTTCTTCGTTTGCTTTTGCAAGGATT 3980 Query 6599 AGGCCACCACGAGGGCCGCGCAAAGTTTTATG---AGTTGTAGTAGTAACAACGTCGGCA 6655 | ||| ||| || || |||||||||||||| |||||| || || ||| || ||| Sbjct 3979 AAACCAGAACGTGGACCACGCAAAGTTTTATGCGTAGTTGTGGTTGTTACA---TCAGCA 3923 Query 6656 CCCCATTTG-AGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCAT 6714 ||||| | |||| | | || | || ||||||||| || ||||||| || ||||| Sbjct 3922 ----ATTTGCACTGGACTTGGGTATACACCAGCAGCAACTAAACCAGCAACGTGAGCCAT 3867 Query 6715 ATCGAC 6720 ||| || Sbjct 3866 ATCTAC 3861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555337722713200