Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3658 149 1e-30 seq3660 86.0 1e-11 >seq3658 Length=1447888 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| ||||||||||| || |||||||| |||||| Sbjct 42488 AGAACGAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGAGAGAGTTCTTCCGTCT 42547 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||| || || || || ||||| ||||| || || || ||||| || || Sbjct 42548 TCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCT 42607 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| ||||| ||||| || | ||| || || ||| ||||| || || || ||| Sbjct 42608 TGGATCTTGGCTTTGACATTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATGGTC 42667 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || || ||||| Sbjct 42668 TTTCCAGTGAGCGTCTTCACGAAGATTTGCAT 42699 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || || || ||||| ||||| || | || | || || Sbjct 42716 AGAACGAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCCGACAAGGTCCGTCCATCC 42775 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| ||||| || ||||| || ||||| ||||| || || ||||| ||||| || Sbjct 42776 TCGAGTTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCTGGTGGGATTCCCTCTTTGTCT 42835 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || || || | ||||||| || ||| ||||| || ||||||||| Sbjct 42836 TGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACCTCGAGGGTAATAGTC 42895 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || || || || ||||||||| Sbjct 42896 TTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 42928 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| || ||||| | || || || ||||| |||||| Sbjct 42275 GTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCAAGTTGCTTTCCA 42334 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || || || ||||| ||||| |||||||| || || || ||||| || || Sbjct 42335 GCAAAGATGAGTCTTTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTC 42394 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || ||| ||||| || || || ||||| ||||| || || Sbjct 42395 ACGTTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTC 42454 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 42455 TTCACGAAGATTTGCAT 42471 >seq3660 Length=1640336 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || || || || || || ||||| || || |||||||| || || || ||||| || Sbjct 486263 CCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCC 486322 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | ||||||| | || || || || |||||||||||||| || || Sbjct 486323 TTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGA 486382 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || || || ||||| Sbjct 486383 GTCTTGACGAAGATTTGCAT 486402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151344259088360