Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq210 370 2e-98 >seq210 Length=3885 Score = 370 bits (410), Expect = 2e-98 Identities = 340/430 (79%), Gaps = 0/430 (0%) Strand=Plus/Minus Query 12197 CTGCCGGAGCCGCTAAGCTTGCTGCGGCCACCATGCCGGGCGGTAAGAAAATAAATCTTA 12256 ||||||||||||| ||||| || || ||||| | || ||||| || ||| ||| || Sbjct 3885 CTGCCGGAGCCGCAAAGCTGGCAGCCGCCACTGTCCCCGGCGGGAAAAAAGTAACCCTGT 3826 Query 12257 ACGTTATGGCTGTTGGTGACGGCGGTGGAAAACTGCCGGTGCCTGATGCCGGTCAGACGC 12316 | ||||| || |||||||| ||| ||| |||||||||| ||||| ||||||||| Sbjct 3825 CTGCAATGGCCGTGGGTGACGGTAATGGCAAATTGCCGGTGCCGGATGCTGGTCAGACGA 3766 Query 12317 AGCTTGTTAATGAGGTCTGGCGTCACACTCTGAATAAAATCAGCCAGGACAACCGGTACA 12376 | || || ||||||||||||||||| | ||||||||| ||||| ||| ||| | | | Sbjct 3765 AACTGGTGCATGAGGTCTGGCGTCACGCCCTGAATAAAGTCAGCGTGGATAACAAGAATA 3706 Query 12377 GTAATTACATTGTGGCCGAGCTGGTTATTCCGCCGGAGGTGGGCGGCTTCTGGATGCGTG 12436 || || || ||||| || |||||| | ||||| || |||||||||||||||||||||| Sbjct 3705 AAAACTATATCGTGGCTGAACTGGTTGTACCGCCAGAAGTGGGCGGCTTCTGGATGCGTG 3646 Query 12437 AGCTTGGCCTTTATGACGATGAAGGGACGCTGATTGCTGTCGCCAATATGGCCGAAAGCT 12496 | ||||| || |||||||||| || || |||||||| ||||| || |||| ||||||| Sbjct 3645 AACTTGGTCTGTATGACGATGCCGGAACACTGATTGCGGTCGCTAACATGGTAGAAAGCT 3586 Query 12497 ACAAGCCAGAACTGGCTGAGGGCTCGGGGCGTGCACAGACATGCCGCATGGTCATTATTG 12556 | ||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||||| Sbjct 3585 ATAAGCCTGAACTGGCTGAAGGCTCCGGGCGTGCGCAGACCTGCCGCATGGTTATTATTG 3526 Query 12557 TCAGCAGTGTCGAGTCTGTGGCGCTGTCCATTGACTCAACGATGGTGATGGCGACGCAGG 12616 |||| | || | |||||| | |||| ||||| | | | ||||||||||||||||| Sbjct 3525 TCAGTAACGTGGCGTCTGTTGAGCTGAGTATTGATGCCAGCACGGTGATGGCGACGCAGG 3466 Query 12617 ATTATGTCGA 12626 |||| ||||| Sbjct 3465 ATTACGTCGA 3456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97909332802920