Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq1868 715 0.0 seq3622 349 2e-91 >seq1868 Length=6173 Score = 715 bits (792), Expect = 0.0 Identities = 411/421 (98%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 22984 GATTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTG 23043 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GATTTAGCCCCGACATAGCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTG 60 Query 23044 CCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCG 23103 |||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| Sbjct 61 CCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAATCG 120 Query 23104 TGTTGAGGCCAACGCCCATAATGCGGGCGGTTGCCCGGCATCCAACGCCATTCATGGCCA 23163 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 TGTTGAGGCCAACGCCCATAATGCGGGCTGTTGCCCGGCATCCAACGCCATTCATGGCCA 180 Query 23164 TATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCC 23223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCC 240 Query 23224 ATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTAC 23283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTAC 300 Query 23284 GCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAG 23343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAG 360 Query 23344 CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCCTCTGA 23403 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 361 CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGCTTCCTGA 420 Query 23404 A 23404 | Sbjct 421 A 421 >seq3622 Length=753369 Score = 349 bits (386), Expect = 2e-91 Identities = 332/422 (79%), Gaps = 2/422 (0%) Strand=Plus/Minus Query 22627 GTAATGACTCAAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCA 22686 |||||||| | || ||||||| | |||||||||||| ||| ||| | |||||||||||| Sbjct 559377 GTAATGACACCAAATTATTGAGACTGTTTTATGTTCTGATTCTGCTCAATGACTTTGTCA 559318 Query 22687 TGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGC 22746 |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 559317 TGCAACTCCACCGAGTTTGAAAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGC 559258 Query 22747 CTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGC 22806 || |||||||||| | || |||| ||||||||||||||| |||||||||| Sbjct 559257 CTTTAATTCAGGTTAATTTTTTGGTTTGCCTGCTTATATCGCTTGCTGAGTACGTGCAGC 559198 Query 22807 TTTCCCTTCAGGCG-GGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTC 22865 |||||||||||||| |||||||| ||||||| || ||||||| |||| | Sbjct 559197 TTTCCCTTCAGGCGCTGATTCATAGTGCGGCCAATGATGTATCATCCAAATCATTGGATA 559138 Query 22866 AAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATCGTGCGTTC-ACCGAATA 22924 ||| |||||| | || || || | | ||| |||| ||| ||||| | | | |||| Sbjct 559137 AAAAGGTGACTCCCAGCGCACAAAATACTCCACCGTCTTCATTATGCGTACAAACAAATA 559078 Query 22925 CGTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCG 22984 | ||||| | | ||||||||||||| |||||||| | ||||||| || |||||||||| Sbjct 559077 CATGCGCGAAACCCGTCTTCCGGAGACTGTCATAAACATAAAACACCCGGCGCTGGCGCT 559018 Query 22985 ATTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGC 23044 ||| ||||| || || |||| ||||||||||||||||| |||| |||| || |||| Sbjct 559017 ATTAAGCCCACACATAACCCCTTTGTTCGTCCATTTCCGCACAGATTATGATTTCGCTGC 558958 Query 23045 CC 23046 || Sbjct 558957 CC 558956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303221636858070