Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3658 138 1e-27 seq3618 104 2e-17 >seq3658 Length=1447888 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | || | |||||||| | |||||||||||||| | || ||||| Sbjct 43475 CATTCCTCCTCTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATC 43534 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | || ||| |||||| || || ||||| | ||||| | ||||||||||||||| Sbjct 43535 GGACAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGG 43594 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||| ||||| ||||| | || || ||||||||| | | ||||| | | || Sbjct 43595 TGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTC 43654 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | |||||||| |||||||| || || ||||| ||||| ||||| Sbjct 43655 AACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 43705 Score = 109 bits (120), Expect = 5e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | ||| |||||||||||||| || ||||| ||||| | |||||| ||||| | Sbjct 42108 CAAAGATGAGTCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTTGGCCTTCA 42167 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| ||||||| | ||||| || | |||||||| ||||| || || |||| Sbjct 42168 CATTCTCGATGGTGTCAGAGGCTTCGACCTCGAGTGTGATGGTCTTTCCGGTGAGCGTTT 42227 Query 94992 TCACAAAGATCTGCATGC 95009 |||| || |||||||||| Sbjct 42228 TCACGAAAATCTGCATGC 42245 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| |||||| | || || || | ||| || ||||| || || ||||| || Sbjct 41085 ATCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTT 41144 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||||||| ||| ||||||| | ||||| || | ||||| Sbjct 41145 GTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGAT 41204 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| |||||||| || || || || ||||||||||| Sbjct 41205 GGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 41240 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || || ||||| ||||||| | |||||||||||||||||| || ||||| || Sbjct 42316 ATCCTCAAGTTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGAGGGATTCCTTCCTT 42375 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| ||| | | ||||||| || || || | ||||| Sbjct 42376 GTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGAT 42435 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| |||||||| || || ||||| ||||| ||||| Sbjct 42436 GGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 42471 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || || ||||| | ||||| | ||| ||||||||||| ||||| ||||| || Sbjct 41815 ATCTTCGAGTTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTT 41874 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || | | ||||||| | ||||| |||| ||||| Sbjct 41875 GTCTTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGAGGCTTCGACCTCAAGAGTGAT 41934 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||| || || || || || ||||||||||| Sbjct 41935 GGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 41970 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| | ||||||||||||||| || || ||||| ||||| | ||| || ||||||||| Sbjct 41609 AAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTAGCCTTGACG 41668 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | ||||| | | ||||| || | |||||||| |||||||| | ||| || Sbjct 41669 TTCTCAATGGTGTCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTG 41728 Query 94994 ACAAAGATCTGCAT 95007 || ||||||||||| Sbjct 41729 ACGAAGATCTGCAT 41742 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| | ||||||||||||||| || || || |||||||| | || |||||||||||| Sbjct 43069 AAGATAAGTCTTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTTGCCTTGACG 43128 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| ||||| | || || || | ||||| || |||||||||||||| || Sbjct 43129 TTCTCGATTGTGTCGGAAGCTTCCACTTCGAGTGTGATAGTCTTTCCAGTAAGAGTCTTG 43188 Query 94994 ACAAAGATCTGCAT 95007 || ||||||||||| Sbjct 43189 ACGAAGATCTGCAT 43202 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| | |||||| |||||||| || || || |||||||| | || |||||||||||| Sbjct 43344 AAGATAAGTCTTTGTTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTTGCCTTGACG 43403 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| ||||| | || || || | ||||| || |||||||||||||| || Sbjct 43404 TTCTCGATTGTGTCGGAAGCTTCCACTTCGAGTGTGATAGTCTTTCCAGTAAGAGTCTTG 43463 Query 94994 ACAAAGATCTGCAT 95007 || ||||||||||| Sbjct 43464 ACGAAGATCTGCAT 43477 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| |||||| | ||||| | ||| ||||||||||| || || || |||||| Sbjct 43779 TCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCTTTG 43838 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || || ||||| | | ||||| | || || || | |||||| Sbjct 43839 TCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGGAAGCCTCCACCTCCAAGGTGATG 43898 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 ||||||||||| | |||||||| ||||| |||||| || Sbjct 43899 GTTTTTCCAGTCAACGTTTTCACGAAGATTTGCATGATT 43937 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| |||||| | ||||| | ||| ||||||||||| || || ||||| ||| Sbjct 42545 TCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTTG 42604 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || || ||||| | | ||||||| || || || | |||||| Sbjct 42605 TCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATG 42664 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||| || || ||||| ||||| ||||| Sbjct 42665 GTCTTTCCAGTGAGCGTCTTCACGAAGATTTGCAT 42699 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || || |||||| | || || | ||| ||||||||||| || || || ||||| Sbjct 42772 ATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCTGGTGGGATTCCCTCTTT 42831 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||||||| ||| || || | ||||| || | || || Sbjct 42832 GTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACCTCGAGGGTAAT 42891 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||| || || || || ||||||||||| Sbjct 42892 AGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 42927 >seq3618 Length=512689 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||| | ||||| || | || || ||||| || | ||| || ||| Sbjct 495179 CCTCCACGGAGTCGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 495120 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||| || || ||||| | ||||| | |||||||||||||| || Sbjct 495119 AGAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGCTGGG 495060 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||||||| ||| |||||| | ||||| Sbjct 495059 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACC 495000 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| ||||| || || || ||||| ||||| ||||| Sbjct 494999 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATTTGCAT 494953 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||| | ||||| || | || || ||||| || | ||| || ||| Sbjct 509363 CCTCCACGGAGTCGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 509304 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||| || || ||| | | ||||| | |||||||||||||| || Sbjct 509303 AGAGTACGTCCATCCTCAAGTTGCTTTTCAGCGAAGATGAGTCTTTGCTGATCTGCTGGG 509244 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||||||| ||| |||||| | ||||| Sbjct 509243 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACC 509184 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| ||||| || || || ||||| ||||| ||||| Sbjct 509183 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATTTGCAT 509137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448270634641200