Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3663 188 9e-43 seq3649 84.2 3e-11 >seq3663 Length=2118579 Score = 188 bits (208), Expect = 9e-43 Identities = 327/472 (69%), Gaps = 5/472 (1%) Strand=Plus/Minus Query 61984 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62043 ||||||| | |||||| |||| | | | || || ||||| || | |||||||||| Sbjct 1960525 CCTTGTCGACTGTGAACTGAACAGCATTGACAGCTGGCTTCGTGCGCAAGTAGTACATTC 1960466 Query 62044 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62103 | || || || || | |||||||||| || ||||| || | | | || || | Sbjct 1960465 CAGTCTTAAGGCCTTGCTTCCATCCGTAGAAGTGCATCGAAGTGATTGCAGCGTAGCTTG 1960406 Query 62104 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62163 | | || || || ||||| | ||||||| |||||| ||||| ||||| | || |||| Sbjct 1960405 GTTTAGCCATGTGAATATTGAGAGATTGAGATTGATCAATGAATGCTCCACGATCAGCAG 1960346 Query 62164 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATA 62222 |||| | ||||| |||||| | |||||||| | ||| ||| | ||| |||||| Sbjct 1960345 CCATCTCAATGATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAGAGCTC-CTTAATG 1960287 Query 62223 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62279 || |||| | | || | |||||||||||||| | || || | | ||||| Sbjct 1960286 TCAGCTGGGATTTCTGGGATGTTCTGAATGGATCCGTTGTTGGCTATGAGGCGGTTCTTC 1960227 Query 62280 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62339 || |||||| |||| ||| |||||| ||| | | || | ||| ||||| |||| Sbjct 1960226 ATTTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATATGTGGATTGACTATC 1960167 Query 62340 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62399 || || |||||||| | || | |||| || || || ||| || || || | |||| Sbjct 1960166 TGGAAGTCTCCAGAAAGAACACGACGAGAATAGATGTTTGAGGTGTATGGCTCAATCGAC 1960107 Query 62400 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62451 ||||| ||||| | |||||||||||| || ||||| ||||| || |||| || Sbjct 1960106 TCATTGTTTCCAAGAATTTGAGCAGTAGAAGCAGTTGGCATTGGAGCCATCA 1960055 Score = 187 bits (206), Expect = 3e-42 Identities = 481/725 (66%), Gaps = 16/725 (2%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||||||||| |||||||| | || | ||| || ||||| || ||||||| || Sbjct 1959079 TTCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCATTCGCATGGGCACATCAGAGA 1959020 Query 63197 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63253 ||| | || | ||||||| || || ||||| |||||||| |||||||| ||||| | Sbjct 1959019 CCAAT-TCTG--ATCCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGCGAG 1958963 Query 63254 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 || | || | | | | || || ||| || ||||| || | |||| | Sbjct 1958962 GAACAAGTCACGAGCACGCTCCTCTTCTGGTCCAGTGTTCTTGCGGAGTGACACGAACTC 1958903 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | || ||| | |||||| || || | ||| ||||| | |||| || || |||||||| Sbjct 1958902 GAAAACATCGGCATGCCATGGCTCGAGGTAGATGGCGAATGCTCCTGGACGCTTGTTTCC 1958843 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 ||| ||||| | || | ||| |||||||| || || | | |||||| || | ||||| Sbjct 1958842 TCCTTGATCGACATAACGAGCAGTGTTATTGTAGACACGAAGCATTGGTATGAGTCCGTT 1958783 Query 63434 TGATATACCATTGGTACCGGAGAT-ATAGCTTCCACTGGCACGAATATT----ACTAATT 63488 ||| | || || || || | ||| | || || |||||||||| || || ||| Sbjct 1958782 CGATGTTCCGTTAGTTCCAGCGATGACAGAA-CCGGTGGCACGAATCTTGTGGAC--ATT 1958726 Query 63489 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63548 || | || ||||| || || | || ||||| | || || | || || ||||| ||| Sbjct 1958725 GA--GCCCGATTCCTCCAGCGCTCTTCGAGATGAGAGCACACTGCTTCAAAGTGTCGTAG 1958668 Query 63549 ATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63608 || || || ||| ||| |||| | || | || || |||||||| |||| Sbjct 1958667 ATTCCAAGAATCGAATCCTCGCTCATCGTCAGCAAGAAGCAAGACGACATTTGTGGACGG 1958608 Query 63609 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63668 | ||||| | || || | || |||||||| || || | | || || | ||| Sbjct 1958607 CATGTTCCAGAGTTGAAGAGAGTTGGAGAAGCATGAGTCATGTAGCGCTCCGACATCAGA 1958548 Query 63669 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63728 ||||||||||| || || | | || ||| | || ||||| | | |||||||| Sbjct 1958547 TTGTACGTCTCGATGGCAGCAGCAATGTCCTCTCCGTGGATTCCGATAGAAACACGCATC 1958488 Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788 ||||| || || || | |||||||| | ||||| ||||| | | |||||| ||| Sbjct 1958487 AACATCTGTTGTGGCCGCTCAACGATTTCCTTGTTGATTTTGAGAAGGTAGGAACGTTCA 1958428 Query 63789 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63848 | |||||| || || || ||| |||| || | || || ||||| | || | ||||| Sbjct 1958427 AGAGTTTTGAATCCGAAGTAGGTGTAGGAGTAATCACGATCGTAGACGATCGCAGAGTTC 1958368 Query 63849 AGTTT 63853 || || Sbjct 1958367 AGCTT 1958363 >seq3649 Length=974952 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/178 (71%), Gaps = 7/178 (4%) Strand=Plus/Minus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 || || || ||||| || | ||| ||||| || || ||||| || ||||| || || Sbjct 67605 ATGAGCTCATTGGAGTGTGTCAATCCTGGCATGAGTCCTCGCTTCTTGAGCCAGAAGATT 67546 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33459 || ||||| |||||| |||||||||||||| || || || ||||| || || | || Sbjct 67545 GAGGCGAACGATCCACTGAAGAAGATTCCTTCGACAGCGGCGAAGGCGATGAGACGTTCG 67486 Query 33460 CCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33512 | | || ||| || ||| |||||||| |||||| ||||||||||| || Sbjct 67485 GC--GAACGACGCCTTCTTGTCCGAGATCCACTTCATAGCCCAGTCGGCCTTCTTCTT 67430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622918622297200