Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq155 143 3e-29 >seq155 Length=4151 Score = 143 bits (158), Expect = 3e-29 Identities = 214/304 (70%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 6918 CTTTATGCCCATGTGTTAAATGACCACCGCAATCCAAAGACATCGCCAATACTGAATCGC 6977 ||||| ||||| || ||||||||||| |||| ||| | || || | ||| | Sbjct 3660 CTTTAGCACCATGAGTCAAATGACCACCATGCGCCAAGCTCATGCCTAAAACAGTATCAC 3601 Query 6978 CTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAA 7037 |||| | || || ||| | ||||| ||| |||||| || ||||| | ||| || |||| Sbjct 3600 CTGGGTTAAGTAAAGCAAGATAAACTGCTGAGTTTGCTTGAGAACCTGCATGTGGCTGAA 3541 Query 7038 CGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCT 7097 | ||||| | | || ||| | | |||||||||| || || |||| | |||||| Sbjct 3540 CATTTGCATAGTCAGCACCAAATAATGCTTTAGCACGATCGATCGCCAATTGTTCGATCA 3481 Query 7098 CATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGT 7157 |||| | | | |||||||||| ||||| || ||||| || || || || ||||| |||| Sbjct 3480 CATCAACATATTCACAACCGCCATAATAGCGCTTGCCAGGGTAACCTTCCGCATATTTGT 3421 Query 7158 TGGTAAAAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGATGCAA 7217 | || | | || ||||| |||| ||||||| | || ||||||||| ||||| | Sbjct 3420 TAGTGAGTTTTGACCCTTGTGCTTCCATAACAGCTGGTGAGCAATAGTTTTCAGATGCGA 3361 Query 7218 TCAA 7221 | || Sbjct 3360 TTAA 3357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553328214903600