Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3658 104 2e-17 seq3618 96.9 3e-15 >seq3658 Length=1447888 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || || | |||||||| | |||||| |||| | ||| | Sbjct 43706 AATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCCTC 43647 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| ||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 43646 GGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCA 43587 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||||| | || || || ||||| || |||| | | | ||| || || Sbjct 43586 GCAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTTTGTCCGATTACAA 43527 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || ||||| |||||||| |||| |||| || | || |||||||||| Sbjct 43526 TATCCAAAAGGAATCTACACTCCACTTGGTTCTCCGTCTCAGAGGAGGAA 43477 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | |||||||| | |||||| |||| | ||| | Sbjct 41240 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 41181 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| ||||| ||||| |||||||| || || || ||| Sbjct 41180 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 41121 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| || ||| || || ||||| |||| | | | | ||||| ||| Sbjct 41120 CAACGTTTGATTTTCGCCGGAAAGCAGCTCGAGGATGGACGGACCTTGTCGGACTACAAC 41061 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAAATATGATT 27007 || ||||| || || ||| | ||||| || || | ||| | |||||| | || | ||| Sbjct 41060 ATCCAAAAGGAGTCAACTCTTCATCTCGTTCTTCGTCTTCGTGGAGGAGATATGTAATT 41002 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | |||||||| | |||||| |||| | ||| | Sbjct 42471 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCTTCT 42412 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || ||||| ||||| ||||| || ||||| ||||| Sbjct 42411 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGATCAG 42352 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | | || || ||||| || |||| | | | |||||| ||| Sbjct 42351 CAAAGACTCATCTTTGCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAAC 42292 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || || ||||| ||||||| |||| | ||||| Sbjct 42291 ATCCAGAAAGAGTCCACCCTCCATTTGGTCCTCCGACTCCGTGGAGG 42245 >seq3618 Length=512689 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || || | || ||||| | |||||| |||| | ||| | Sbjct 494952 AATGCAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTC 495011 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| |||||| | ||||| ||||| ||||| ||||| || || | ||||| Sbjct 495012 CGACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATCA 495071 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||||| | || || || ||||| || |||| | | | |||||| || Sbjct 495072 GCAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAA 495131 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || || || || || ||||| ||||||| |||| | ||||| Sbjct 495132 CATCCAGAAGGAGTCCACCCTCCATTTGGTCCTCCGACTCCGTGGAGG 495179 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || || | || ||||| | |||||| |||| | ||| | Sbjct 509136 AATGCAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTC 509195 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| |||||| | ||||| ||||| ||||| ||||| || || | ||||| Sbjct 509196 CGACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATCA 509255 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||||| | || | || ||||| || |||| | | | |||||| || Sbjct 509256 GCAAAGACTCATCTTCGCTGAAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAA 509315 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || || || || || ||||| ||||||| |||| | ||||| Sbjct 509316 CATCCAGAAGGAGTCCACCCTCCATTTGGTCCTCCGACTCCGTGGAGG 509363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478640441362400