Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3663 179 1e-39 >seq3663 Length=2118579 Score = 179 bits (198), Expect = 1e-39 Identities = 446/670 (67%), Gaps = 18/670 (3%) Strand=Plus/Plus Query 363415 TCCTACCTATCTCGTA-TCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCG 363473 |||||||| |||| | |||| || || ||||| || || || || ||||| ||||| Sbjct 1958435 TCCTACCT-TCTCAAAATCAACAAGGAAATCGTTGAGCGGCCACAACAGATGTTGATGCG 1958493 Query 363474 TGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCT--- 363530 |||| |||| || ||||| | ||| ||| ||| || || || || || || || Sbjct 1958494 TGTTTCTATCGGAATCCACGGAGAGGACATTGCTGCTGCCATCGAGACGTACAATCTGAT 1958553 Query 363531 -TCTAAGTGCT-CGTGTATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGT 363588 || || ||| | || || || || | ||||| | | ||| ||||||| | Sbjct 1958554 GTCGGAGCGCTACATG-----ACTCATGCTTCTCCAACTCTCTTCAACTCTGGAACATGC 1958608 Query 363589 AATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATC 363648 |||||| ||||| |||||||| | || | |||| || ||||| || || ||| Sbjct 1958609 CGTCCACAAATGTCGTCTTGCTTCTTGCTGACGATGAGCGAGGATTCGATTCTTGGAATC 1958668 Query 363649 TTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCG 363708 | ||||| | ||| | |||||||| || || |||| || || ||||| || | Sbjct 1958669 TACGACACTTTGAAGCAGTGTGCTCTCATCTCGAAGAGCGCTGGAGGAATCGGGCTCAAT 1958728 Query 363709 ATCCACAATGTTCGTGCACAGAACAGTTACAT--TCGC-GGCACAGGGGGATACTCGAAT 363765 ||||||| ||||||| | | ||| | |||| || || ||| ||||| Sbjct 1958729 GTCCACAAGATTCGTGCC---ACCGGTTCTGTCATCGCTGGAACTAACGGAACATCGAAC 1958785 Query 363766 GGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGA 363825 || || | || ||||||||||| | | || ||||| | || ||||| || || ||| Sbjct 1958786 GGACTCATACCAATGCTTCGTGTCTACAATAACACTGCTCGTTATGTCGATCAAGGAGGA 1958845 Query 363826 GGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAG 363885 ||||| ||| || || || || || |||||||| ||||||||| |||| ||| Sbjct 1958846 AACAAGCGTCCAGGAGCATTCGCCATCTACCTCGAGCCATGGCATGCCGATGTTTTCGAG 1958905 Query 363886 TTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTAT 363945 || | ||||| || ||||| ||| ||| || |||||| ||||| ||||| Sbjct 1958906 TTCGTGTCACTCCGCAAGAACACTGGACCAGAAGAGGAGCGTGCTCGTGACTTGTTCCTC 1958965 Query 363946 GCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTC 364005 || || ||| || | || | || |||||||| || ||| | | |||||||||| || Sbjct 1958966 GCTCTCTGGATTCCGGATCTCTTCATGAAGCGTGTCGAGAAGGATCAGAATTGGTCTCTG 1959025 Query 364006 TTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTA 364065 | |||||| |||||| ||||| ||| || ||||| || || | | ||||| Sbjct 1959026 ATGTGCCCATGCGAATGCCCAGGACTTGATGACTGCTGGGGAGAGGAGTTCGAAGCTCTT 1959085 Query 364066 TACGAAAAGT 364075 |||| |||| Sbjct 1959086 TACGCCAAGT 1959095 Score = 89.7 bits (98), Expect = 1e-12 Identities = 271/412 (66%), Gaps = 10/412 (2%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || ||||||||||| || || || |||||||| |||| | || || Sbjct 1960060 GCTCCAATGCCAACTGCTTCTACTGCTCAAATTCTTGGAAACAATGAGTCGATTGAGCCA 1960119 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || || | ||||| || || |||||||| ||||| || | | |||| ||| Sbjct 1960120 TACACCTCAAACATCTATTCTCGTCGTGTTCTTTCTGGAGACTTCCAGATAGTCAATCCA 1960179 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 | | |||||||| | || | || ||||| ||| ||||||||| || Sbjct 1960180 CATATGCTCAAGGATTTGGTTGAGAGAGGATTGTGGACTGATGAAATGAAGAACCGCCTC 1960239 Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATT 364989 || ||| || || || | |||||||| |||| | | |||| || | ||| | Sbjct 1960240 ATAGCCAACAACGGATCCATTCAGAACATCCCAGAAATCCCAGCTGACATTAAGGAGCTC 1960299 Query 364990 TACAAAACCGTATGGGAAATTTC-CATGCGAACTCTCATTGATATGGCGGCCGATCGCGG 365048 || || || |||||||| || || | | ||||||| ||||| || ||||| || Sbjct 1960300 TATCTCACTGTGTGGGAAATCTCTCAAAAGGA-AATCATTGAGATGGCTGCTGATCGTGG 1960358 Query 365049 TGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT--CATGACTCAGCCAACCTCCGC- 365105 || || || ||| || || | || |||| |||| || | |||| || ||| Sbjct 1960359 AGCATTCATTGATCAATCTCAATCTCTCAA--TATTCACATGGCTAAACCAAGCTACGCT 1960416 Query 365106 -CAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||| | || || ||||| |||||||| ||||| || |||||||| || Sbjct 1960417 GCAA--TCACTTCGATGCACTTCTACGGATGGAAGCAAGGCCTTAAGACTGG 1960466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303292313869940