Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3658 113 4e-20 seq3618 100 3e-16 >seq3658 Length=1447888 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | || ||||||||||| |||||||| || | Sbjct 41014 CCTCCACGAAGACGAAGAACGAGATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCCGAC 41073 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| | || ||||| || ||||| || ||| Sbjct 41074 AAGGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCTGGTGGG 41133 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | ||| | || || | || |||| Sbjct 41134 ATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACC 41193 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || || || ||||| |||||||| Sbjct 41194 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 41240 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | || ||||||||||| || ||||| || | Sbjct 42701 CCTCCACGAAGACGGAGAACGAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCCGAC 42760 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| || ||||| || ||| | || | | |||||| || || ||| Sbjct 42761 AAGGTCCGTCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCTGGTGGG 42820 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| |||||||| ||| || ||||| | ||| | ||||||| | |||| Sbjct 42821 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACC 42880 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| || || || || || || || ||||| |||||||| Sbjct 42881 TCGAGGGTAATAGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 42927 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| || || | ||| | |||||||||||| || |||||||| || | Sbjct 41744 CCACCTCTGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 41803 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || || ||||| || ||| |||| | | |||||| || || || Sbjct 41804 AAGGTGCGTCCATCTTCGAGTTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTGGA 41863 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| || || ||| | | || | || || | || |||| Sbjct 41864 ATTCCTTCCTTGTCTTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGAGGCTTCGACC 41923 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || ||||| |||||||| Sbjct 41924 TCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 41970 >seq3618 Length=512689 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | || || || ||||| | ||| |||||||| || |||||||| ||| Sbjct 495180 GCCTCCACGGAGTCGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 495121 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| || ||||| || ||| |||| | | ||||| || | || Sbjct 495120 AAGAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGCTGG 495061 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| ||||| ||| || ||||| | ||| | ||| |||| | |||| Sbjct 495060 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGAC 495001 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| || || || ||||| || ||||| Sbjct 495000 CTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATTTGCAT 494953 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | || || || ||||| | ||| |||||||| || |||||||| ||| Sbjct 509364 GCCTCCACGGAGTCGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 509305 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| || ||||| | ||| |||| | | ||||| || | || Sbjct 509304 AAGAGTACGTCCATCCTCAAGTTGCTTTTCAGCGAAGATGAGTCTTTGCTGATCTGCTGG 509245 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| ||||| ||| || ||||| | ||| | ||| |||| | |||| Sbjct 509244 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGAC 509185 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| || || || ||||| || ||||| Sbjct 509184 CTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATTTGCAT 509137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471991146412800