Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3591 98.7 7e-16 seq3658 93.3 3e-14 seq3217 93.3 3e-14 >seq3591 Length=367583 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| Sbjct 298431 CTCTCTCTTCAAAGTCCTTTGCAACTTTCCCTCACGGTACTTGTTCGCTATCGCAATCGA 298490 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 298491 GTCGATATTTAGCCTTA 298507 >seq3658 Length=1447888 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| | ||| | || | |||||||||| |||||| || |||||||| | Sbjct 43703 CATT-CCTCCTCTGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGT 43761 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | |||| || | || |||||||| || || || | || ||||| | Sbjct 43762 CCGAAAGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTG 43821 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| || |||||||| || || || ||||||| | || || | | Sbjct 43822 GTGGGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGGAAGCCT 43881 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || || || || || ||||| || ||||| ||||||||||| || |||||| || Sbjct 43882 CCACCTCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCATGATT 43937 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| | ||| | ||||| || || || |||||||| |||||||||| Sbjct 43475 CATT-CCTCCTCTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAAT 43533 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||||| |||| | || || | ||| ||||| || || || || | ||| ||||| | Sbjct 43534 CGGACAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTG 43593 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| ||||| || || ||| || |||| | || || || Sbjct 43594 GTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTT 43653 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || || || || || | ||| |||||||| || ||||| Sbjct 43654 CAACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 43705 >seq3217 Length=20983 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/96 (83%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG--GGT---AATCTCGT 25956 |||||||||| ||||||||||||||| ||| ||||||| ||||| || |||||||| Sbjct 10006 AAGCCCGTTCTCTTGGCTGTGGTTTCACTAAATAGTAGTTAGGGACAGTACGAATCTCGT 9947 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGAT 25992 || ||| ||||||||||| || |||| |||||||| Sbjct 9946 TATTCCATTCATGCGCGTGAC-AATTTAATGACGAT 9912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334932218439770