Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_008202.2 Length=42289 Score E Sequences producing significant alignments: (Bits) Value seq2028 141 3e-29 seq1401 120 8e-23 >seq2028 Length=10780 Score = 141 bits (156), Expect = 3e-29 Identities = 425/642 (66%), Gaps = 28/642 (4%) Strand=Plus/Minus Query 2629 CGCATGGACGGACACGCCGACGTCTACAGCTTCCCGCAGCTGATCTTGCTCGGCGCCGAC 2688 ||| | || | |||| ||||| | || |||||||||| ||| |||| ||||| || Sbjct 4813 CGCCTCGAAGCACACATGGACGTGTTCACGATCCCGCAGCTCATCCTGCTGGGCGCTAAC 4754 Query 2689 GCGAAGAACT--TCCGCAACAAGGACGGCTCGATGAAGCCGGCCTGGCAGATCGCGTTGG 2746 | ||| | | || ||| ||||| ||| ||| || | ||||||||||| | | Sbjct 4753 G--AAGCAATGTTCAAGAACGCAGACGGGTCGTACAAGGCGTCTTGGCAGATCGCTCTCG 4696 Query 2747 CGCGCGTGTTCGCGCTGCCCGACGACGAGGACGAACCCGACGCGGCGCGG--GCCCGCGC 2804 ||| | | | || | ||||||||||| || | || | | || ||| | ||||| Sbjct 4695 GGCGTGCGCTGGCTATCCCCGACGACGACGATGCTCCTGCTG--GCTCGGATGGGCGCGC 4638 Query 2805 GGACGTGAAGCAATTCCCGGCGTCGAGTCCACAGC--CGCATATCGAGATGCTGGAACAG 2862 |||||||||||| || | ||| |||| | || |||| ||| | ||| | | Sbjct 4637 GGACGTGAAGCACATCGCTGCGC--AGTCGCCGGCACCGCACCTCGCGGCGCTCAACGCG 4580 Query 2863 ATCGCGATGATGTTCAGCGGCGAGACGTCGATTCCGGTCGAATCGCTCGGATT-CTCGAA 2921 | |||| | | || ||| || ||| || | | || ||||||| | ||| Sbjct 4579 TTGGCGAAGCTCG--AGGCGCGCGAGTACGA--CCTGCCCGAT---TCGGATTTCGCGAT 4527 Query 2922 T-CG-----CGCGAACCCGACGTCGGCCGACGCGTATATCGCATCGCGCGAAGACCTGAT 2975 || |||||||||||| ||| || |||| | || || || || || |||| Sbjct 4526 GACGGACTTCGCGAACCCGACTGGGGCGGATTCGTACACGGCGTCTCGGGAGAACTTGAT 4467 Query 2976 CGCCGAAGCCGAAGGCGCGACGGACGACTGGTCGCCGGCGTTCCGCCGATCCATGATCCG 3035 |||||| || || |||||||| || |||||||| | || ||||| | || | || Sbjct 4466 CGCCGAGGCGGAGGGCGCGACCGATGACTGGTCTGTGCCGATCCGCAACGCGGTGGTGCG 4407 Query 3036 CGCGCTGGCGATCAAGAACGGGCTCGACCGGA-TCCCGCCCGAGTGGAAGACGATCGACT 3094 || ||||| ||| ||||||| | ||| | | |||| | || ||| | |||||||| Sbjct 4406 TGCTCTGGCAATCCAGAACGGCGT-GACGGAAGTCCCCGCTGATTGGGCGTCGATCGACA 4348 Query 3095 CCAAGTTCCGGTCGCCGCTGTACCTGTCGAAGGCGGCGCAGGCCGACGCCGGCGCGAAGA 3154 | |||| || || ||| |||| ||||||||||| || || || || ||||||||| Sbjct 4347 CGAAGTGGCGTTCTCCGATGTATCTGTCGAAGGCCGCCGTCGCAGATGCGGGCGCGAAGC 4288 Query 3155 TGCTCGGCGCGGGCCCGGAATGGCTCAAGGAAACCGAAGTCGGGCTCGAATTGCTCGGGC 3214 | || | || || || ||| | ||||| || ||||| | ||| ||||||| Sbjct 4287 AGGTCTCGTCTGGTCCTGACTGGTTGAAGGACACTCGCGTCGGTATGGAAATGCTCGGCA 4228 Query 3215 TGACCCCGCAGCAGGCGAAACGCGCGCTGGCCGAACGCCGGC 3256 |||| | ||||||| | ||||| ||||| || ||| ||| Sbjct 4227 TGACACAGCAGCAGATCGATCGCGCTCTGGCGGAGCGCAGGC 4186 Score = 111 bits (122), Expect = 4e-20 Identities = 296/455 (65%), Gaps = 48/455 (11%) Strand=Plus/Minus Query 868 CAACGGGAGCCGGATCCTGTTCGGCGCGCGTGAGAACGGTTTCGGTCTGGGCTTCGCCGG 927 |||||| ||| |||| |||||||||| |||||| ||| ||||| | ||||||| || Sbjct 6611 CAACGGCAGCGTGATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGA 6552 Query 928 CGTCGGAATCCTCGTGCTCGACGAGGCGCAGCGGCTCACCGACAAGGCCATGGACGACCT 987 |||| ||| || |||| ||||||||| || ||||| ||||| |||| ||| | Sbjct 6551 GGTCGACATCGAGGTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACAT 6492 Query 988 GATTCCGACGATGAACAC----CGTCGAGAATC-----CGTTGATCCTGCTCACTGGCAC 1038 | | | ||| |||| || | | | || || || | | ||| ||||| Sbjct 6491 GGTCGCAGCGACGAACCAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCATGGGCAC 6432 Query 1039 CCCGCCGCGGCCGACGGACTCGGGCGAAGTGTTCACGATGCTTCGGCAAGACGCGCTCGA 1098 || |||||| |||| || | ||||| | || | || || | || ||||| || Sbjct 6431 GCCCCCGCGGGCGACTGATCCTGGCGAGGAGTGGCTGGAGCGCCGCAATGATGCGCTTGA 6372 Query 1099 C------------------------GGCGAGTCCGAAGGCACGCTGTATGTCGAGTTCTC 1134 ||| ||| || | ||| |||| ||||||||||| Sbjct 6371 GATCAAGCCGATGGATCAGGTTGTGGGCCTGTCGGAGGACACAGTGTACGTCGAGTTCTC 6312 Query 1135 CGCGGACGAGGGCGCGCACCCCGACGACCGGGCGCAGC-TGCGCAAGGCGAACCCGTCGT 1193 |||||| ||| |||| |||| |||||| || || | |||| ||||| || || |||| Sbjct 6311 GGCGGACAAGGACGCGGACCCGGACGACATGGAACAACTTGCG-AAGGCCAATCCTTCGT 6253 Query 1194 ATCCGCACCGCACCAGTGAGCGCGCGATTCG-----GCGTATGCGAAAGAACCTC---AC 1245 ||| ||||||||| ||| ||| ||| ||| ||||| ||||||||| | Sbjct 6252 TTCCACACCGCACC-----CCGCTCGAGTCGGTCATGCGGATGCGGAAGAACCTCAAGAA 6198 Query 1246 CGAAGAGTCATTTCTGCGTGAGGCGTTCGGCATCT 1280 ||| || || || |||||||||| | ||||||| Sbjct 6197 CGAGGACTCGTTCAAGCGTGAGGCGATGGGCATCT 6163 >seq1401 Length=3734 Score = 120 bits (132), Expect = 8e-23 Identities = 434/666 (65%), Gaps = 46/666 (7%) Strand=Plus/Minus Query 658 CCGACAGGTCGGCAAGACGTACCTGATCGGCTGCATCGTGTTCGCCCTGGCGCTGC---- 713 ||| |||||||||||||||| | ||||| | ||| | |||||||| |||| Sbjct 1257 CCGCCAGGTCGGCAAGACGTTCACCATCGGGTCGATCATCTTCGCCCT----CTGCATCA 1202 Query 714 TCACGCCTGGGCTGACTGTCATCTGGACCGCGCACCGGACGAAGACCGCGAAGGAAACGT 773 || || ||| || ||||||||||||||||||| | ||| | || || |||| Sbjct 1201 TCTTCCCGAAGCTCACGGTCATCTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGT 1142 Query 774 TCGGCTCGATGAAGGCCATGTGCGCA-ACGCCGCTGGTGAACGCGCACGTGCGGAACGTC 832 ||| ||| || ||| | | || || | || | |||| | |||| | ||| | || Sbjct 1141 TCGAGTCGCTGCAGGGCTTC-GCCCAGAAGCGGAAGGTGGCCCCGCATATCCGGCAGATC 1083 Query 833 AGCGACGCGCGCGGCGACGAGGGAATCTATCTGCAC-AACGGGAGCCGGATCCTGTTCGG 891 || | | ||| | || ||| | || || ||||| ||||||| ||||||| Sbjct 1082 CGCCGAGTGAACGGGCAGCAGCAGATC-ACCTTCAAGAACGGCTCCCGGATCATGTTCGG 1024 Query 892 CGCGCGTGAGAACGGTTTCGGTCTGGGCTTCGCCGGCGTCGGAATCCTCGTGCTCGACGA 951 || || ||| ||| ||||| | ||||||||||| |||| || | ||| ||| || Sbjct 1023 TGCCCGCGAGTCCGGCTTCGGCCGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGA 964 Query 952 GGCGCAGCGGCTCACCGACAAGGCCATGGACGACCTGATTCCGACGATGAACACCGTCGA 1011 ||||||| ||| | |||||||| | || ||| || | || | | ||| || |||| Sbjct 963 GGCGCAGATCCTCGGCAACAAGGCCCTTGAGGACATGGTGCCCGCCACCAACGCC-TCGA 905 Query 1012 -GAATCCGTTGATCCTGCTCACTGGCACCCCGCCGCGGCCGACGGACTCGGGCGAAGTGT 1070 ||| ||| | ||| | || | ||||||||||| || || ||| | ||||||| || Sbjct 904 AGAACCCGCTCATCATCCTGATGGGCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGT 845 Query 1071 TC-------------ACGATGC-TTCG---GCAAGA----CGCGCTCGACGGCGAG---T 1106 || |||| || ||| ||||| ||| || |||||| Sbjct 844 TCCGCACCCGCCGAAACGAAGCGATCGAGCTCAAGAAGCTCGCCGCCGCGGGCGAGGACA 785 Query 1107 CCGAA---GGCACGCTGTATGTCGAGTTCTCCGCGGACGAGGGCGCGCACCCCGACGACC 1163 ||||| | || ||| || ||||| || ||| ||| | ||| ||| |||||| Sbjct 784 CCGAATCGGACATGCTCTACGTCGAACTCGGCGCAGACCCCGACGCCGACCTGGACGACT 725 Query 1164 GGGCGCAGCTGCGCAAGGCGAACCCGTCGTATCCGCACCGCACCAGTGAGCG-CGCGATT 1222 ||| ||| | |||||| ||||| || || |||||||||||| ||| ||||| Sbjct 724 GGGATCAGGTCGCCAAGGCCAACCCCTCCTACCCGCACCGCACC-CCACGCGAAGCGATC 666 Query 1223 CGGCGTATGCGAAAGAACCTCAC---CGAAGAGTCATTTCTGCGTGAGGCGTTCGGCATC 1279 | || | || ||||||||| | ||| || || | | || || | |||||||| Sbjct 665 CTCCGCAACCGCAAGAACCTCGCCGACGACGACTCCTACCGCCGAGAAGGCCTCGGCATC 606 Query 1280 TGGGAC 1285 |||||| Sbjct 605 TGGGAC 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135197307675540