Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3663 187 3e-42 seq3649 84.2 3e-11 >seq3663 Length=2118579 Score = 187 bits (206), Expect = 3e-42 Identities = 481/725 (66%), Gaps = 16/725 (2%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||||||||| |||||||| | || ||||| || ||||| || ||||||| || Sbjct 1959079 TTCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCATTCGCATGGGCACATCAGAGA 1959020 Query 63052 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63108 ||| | || | ||||||| || || ||||| |||||||| |||||||| ||||| | Sbjct 1959019 CCAAT-TCTG--ATCCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGCGAG 1958963 Query 63109 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63168 || | || | | | | || || ||| || ||||| || | |||| | Sbjct 1958962 GAACAAGTCACGAGCACGCTCCTCTTCTGGTCCAGTGTTCTTGCGGAGTGACACGAACTC 1958903 Query 63169 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228 | || ||| | |||||| || || | ||| ||||| | |||| || || |||||||| Sbjct 1958902 GAAAACATCGGCATGCCATGGCTCGAGGTAGATGGCGAATGCTCCTGGACGCTTGTTTCC 1958843 Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 63288 ||| ||||| | || | ||| |||||||| || || | | |||||| || | || || Sbjct 1958842 TCCTTGATCGACATAACGAGCAGTGTTATTGTAGACACGAAGCATTGGTATGAGTCCGTT 1958783 Query 63289 GGATGTACCATTGGTCCCTGAGAT-ATAGCTTCCACTGGCACGAATATT----ACTAATT 63343 ||||| || || || || | ||| | || || |||||||||| || || ||| Sbjct 1958782 CGATGTTCCGTTAGTTCCAGCGATGACAGAA-CCGGTGGCACGAATCTTGTGGAC--ATT 1958726 Query 63344 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 63403 || | || ||||| || || | || ||||| | || || | || || || || ||| Sbjct 1958725 GA--GCCCGATTCCTCCAGCGCTCTTCGAGATGAGAGCACACTGCTTCAAAGTGTCGTAG 1958668 Query 63404 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63463 || || || ||| || |||| | || | || || |||||||| |||| Sbjct 1958667 ATTCCAAGAATCGAATCCTCGCTCATCGTCAGCAAGAAGCAAGACGACATTTGTGGACGG 1958608 Query 63464 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGA 63523 | ||||| | || || | || |||||||| ||||| | | || || | ||| Sbjct 1958607 CATGTTCCAGAGTTGAAGAGAGTTGGAGAAGCATGAGTCATGTAGCGCTCCGACATCAGA 1958548 Query 63524 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63583 ||||||||||| || || | | || ||| | || ||||| | | |||||||| Sbjct 1958547 TTGTACGTCTCGATGGCAGCAGCAATGTCCTCTCCGTGGATTCCGATAGAAACACGCATC 1958488 Query 63584 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63643 ||||| || || || | |||||||| | ||||| ||||| | | |||||| ||| Sbjct 1958487 AACATCTGTTGTGGCCGCTCAACGATTTCCTTGTTGATTTTGAGAAGGTAGGAACGTTCA 1958428 Query 63644 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63703 | |||||| || || || ||| |||| || | || || ||||| | || | ||||| Sbjct 1958427 AGAGTTTTGAATCCGAAGTAGGTGTAGGAGTAATCACGATCGTAGACGATCGCAGAGTTC 1958368 Query 63704 AGTTT 63708 || || Sbjct 1958367 AGCTT 1958363 Score = 179 bits (198), Expect = 5e-40 Identities = 325/472 (69%), Gaps = 5/472 (1%) Strand=Plus/Minus Query 61839 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 61898 ||||||| | |||||| |||| | | | || || ||||| || | |||||||||| Sbjct 1960525 CCTTGTCGACTGTGAACTGAACAGCATTGACAGCTGGCTTCGTGCGCAAGTAGTACATTC 1960466 Query 61899 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 61958 | || || || || | |||||||||| || ||||| || | | | || || | Sbjct 1960465 CAGTCTTAAGGCCTTGCTTCCATCCGTAGAAGTGCATCGAAGTGATTGCAGCGTAGCTTG 1960406 Query 61959 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62018 | | || || || ||||| | ||||||| |||||| ||||| ||||| | || |||| Sbjct 1960405 GTTTAGCCATGTGAATATTGAGAGATTGAGATTGATCAATGAATGCTCCACGATCAGCAG 1960346 Query 62019 CCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATA 62077 |||| | || || |||||| | |||||||| | ||| ||| | ||| |||||| Sbjct 1960345 CCATCTCAATGATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAGAGCTC-CTTAATG 1960287 Query 62078 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62134 || |||| | | || | |||||||||||||| | || || | | ||||| Sbjct 1960286 TCAGCTGGGATTTCTGGGATGTTCTGAATGGATCCGTTGTTGGCTATGAGGCGGTTCTTC 1960227 Query 62135 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62194 || |||||| |||| ||| |||||| ||| | | || | ||| ||||| |||| Sbjct 1960226 ATTTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATATGTGGATTGACTATC 1960167 Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254 || || |||||||| | || | |||| || || || ||| || || || | ||| Sbjct 1960166 TGGAAGTCTCCAGAAAGAACACGACGAGAATAGATGTTTGAGGTGTATGGCTCAATCGAC 1960107 Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62306 ||||| ||||| | |||||||||||| || ||||| ||||| || |||| || Sbjct 1960106 TCATTGTTTCCAAGAATTTGAGCAGTAGAAGCAGTTGGCATTGGAGCCATCA 1960055 >seq3649 Length=974952 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 32385 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAAT 32444 ||||| || || || || || || || || || | || || || |||||||| |||||| Sbjct 67967 ACACGCTTCTCAAAGAAGTTGGTCTTTCCATCGATCGAGATGTTCTCCATGAAGTCGAAT 67908 Query 32445 GGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACA 32504 ||||| | ||||| || | || | |||| | ||| | || ||| ||| ||||| Sbjct 67907 GGATTCTTCACATTGTACAGCTTGTCGCATCCGAGTTCCGCAAGCAAGTGATCGGCGACG 67848 Query 32505 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 32564 || || || ||| ||||| ||| ||||| || || | | |||||| || ||| Sbjct 67847 AACTCGATGTATTGAGACATCAGACGACAGTTCATGCCAATCATGTCAACTGGGAGTGCC 67788 Query 32565 ACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 | || | || |||||||| || |||| ||||| | ||||| Sbjct 67787 TCTGTCAAGAACTCTTGTTCGATGCAGACGGCGTCCCTGATAAT 67744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633602932132000