Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3658 109 5e-19 seq3618 87.8 2e-12 >seq3658 Length=1447888 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| | || || || ||||||| |||| || || | || Sbjct 43706 AATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCCTC 43647 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| || ||| ||||| ||||| |||||||| || || Sbjct 43646 GGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCA 43587 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | || || || || || ||| | || |||| || ||| || ||||||||| Sbjct 43586 GCAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTTTGTCCGATTACAA 43527 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| ||||| ||||| || || || || || || | || |||||||||| Sbjct 43526 TATCCAAAAGGAATCTACACTCCACTTGGTTCTCCGTCTCAGAGGAGGAA 43477 >seq3618 Length=512689 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| | ||||| || ||||||| |||| || || | || Sbjct 494952 AATGCAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTC 495011 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||||||| | ||| || ||| ||||| ||||| || ||| | || || Sbjct 495012 CGACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATCA 495071 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | || || || || || ||| | || |||| || ||| | ||| ||||| Sbjct 495072 GCAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAA 495131 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||||| || || Sbjct 495132 CATCCAGAAGGAGTCCACCCTCCATTTGGTCCT 495164 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| | ||||| || ||||||| |||| || || | || Sbjct 509136 AATGCAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTC 509195 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||||||| | ||| || ||| ||||| ||||| || ||| | || || Sbjct 509196 CGACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATCA 509255 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | || || || | || ||| | || |||| || ||| | ||| ||||| Sbjct 509256 GCAAAGACTCATCTTCGCTGAAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAA 509315 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||||| || || Sbjct 509316 CATCCAGAAGGAGTCCACCCTCCATTTGGTCCT 509348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433308618051050