Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3658 100 2e-16 seq3618 95.1 1e-14 seq3660 86.0 5e-12 >seq3658 Length=1447888 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||||||||| || ||| || | Sbjct 41970 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTCGAAGCCTCT 41911 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || |||||||||||||| || |||||||| ||||| Sbjct 41910 GACACCATTGAAAATGTGAAGGCTAAGATTCAAGACAAGGAAGGAATTCCACCAGATCAG 41851 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || || || | || ||| |||||| | || || |||||| Sbjct 41850 CAGAGACTCATCTTCGCTGGAAAGCAACTCGAAGATGGACGCACCTTGTCGGACTACAAC 41791 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || || || ||| | ||| | ||| Sbjct 41790 ATCCAGAAGGAGTCGACCCTTCATCTCGTT 41761 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || ||| || | Sbjct 41240 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 41181 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || ||||||||||| || || ||||| || ||| Sbjct 41180 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 41121 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||| || ||| | |||||| || ||| | || || |||||| Sbjct 41120 CAACGTTTGATTTTCGCCGGAAAGCAGCTCGAGGATGGACGGACCTTGTCGGACTACAAC 41061 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || || || | ||| | ||| | || | || ||||| Sbjct 41060 ATCCAAAAGGAGTCAACTCTTCATCTCGTTCTTCGTCTTCGTGGAGG 41014 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| || || || ||| | | Sbjct 42471 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCTTCT 42412 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || ||||||||||| || || || || ||||| Sbjct 42411 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGATCAG 42352 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| || || || | |||||| || || | ||||| |||||| Sbjct 42351 CAAAGACTCATCTTTGCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAAC 42292 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| |||||| | ||||| || | ||| | || ||||| Sbjct 42291 ATCCAGAAAGAGTCCACCCTCCATTTGGTCCTCCGACTCCGTGGAGG 42245 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| || || || ||| || | Sbjct 43705 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCCTCG 43646 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || ||||||||||| || |||||||| ||||| Sbjct 43645 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 43586 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || || || || || | |||||| || || | ||||||||||| Sbjct 43585 CAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTTTGTCCGATTACAAT 43526 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||||| ||||| || | || || ||| Sbjct 43525 ATCCAAAAGGAATCTACACTCCACTTGGTT 43496 >seq3618 Length=512689 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| || || || ||| | || Sbjct 494953 ATGCAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTCC 495012 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || ||||||||||| || || ||| | ||||| Sbjct 495013 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATCAG 495072 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || || || || || | |||||| || || | ||||| |||||| Sbjct 495073 CAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAAC 495132 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | ||||| || | ||| | || ||||| Sbjct 495133 ATCCAGAAGGAGTCCACCCTCCATTTGGTCCTCCGACTCCGTGGAGG 495179 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| || || || ||| | || Sbjct 509137 ATGCAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTCC 509196 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || ||||||||||| || || ||| | ||||| Sbjct 509197 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATCAG 509256 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || || | || || | |||||| || || | ||||| |||||| Sbjct 509257 CAAAGACTCATCTTCGCTGAAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAAC 509316 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | ||||| || | ||| | || ||||| Sbjct 509317 ATCCAGAAGGAGTCCACCCTCCATTTGGTCCTCCGACTCCGTGGAGG 509363 >seq3660 Length=1640336 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || ||||| || | || || ||||| || || || Sbjct 486402 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCC 486343 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || || ||||||||||| || |||||||| ||||| Sbjct 486342 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 486283 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||| | || || || ||||| Sbjct 486282 CAAAGACTGATCTTCGCCGG 486263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419709226353550