Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3649 131 3e-25 seq3663 91.5 3e-13 >seq3649 Length=974952 Score = 131 bits (144), Expect = 3e-25 Identities = 452/704 (64%), Gaps = 71/704 (10%) Strand=Plus/Plus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| || | ||||||||| ||||| || ||||| |||||| | ||||| ||| ||||| Sbjct 67289 GAGGCTCGATTCTTCTACGGATTCCAAATCGCCATCGAGAACATTCACTCGGAGATGTAC 67348 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG--TAACGGGCTGTTCAAGG 42618 | || || || | || ||||| | ||| ||||| | || |||||||| | Sbjct 67349 TCGAAGCTCATCGAAACCTACATTCGTGATGAGAAGGAGCGCCTTACT--CTGTTCAACG 67406 Query 42619 CCATG---GAGA-CGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATC 42674 |||| ||| ||| | ||||||||||||||| |||||||| | || |||||| Sbjct 67407 CCATTTTCGAGTTCGAA----TTCATCAAGAAGAAGGCCGACTGGGCTATGAAGTGGATC 67462 Query 42675 GAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCAT 42733 | | | || | | |||||| ||| | || | ||||| |||| ||||| || || Sbjct 67463 TCG-GACAAGAAGGCGTCGTTCGCCGAACGTCTCATCGCCTTCGCCGCTGTCGAAGGAAT 67521 Query 42734 CTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCG 42792 ||||||| || | |||||||| ||||||||||||||| || ||| || ||||| | Sbjct 67522 CTTCTTCAGTGGATCGTTCGCCTCAATCTTCTGGCTCAAGAAGCGAGGACTC-ATGCCAG 67580 Query 42793 GACTCACCTTCTCGAACGAACTCATC---AG----------------------------- 42820 || | || ||| || || |||||| || Sbjct 67581 GATTGACACACTCCAATGAGCTCATCTCAAGGTAACAACACAATTTCTTCGGTTTTTTAA 67640 Query 42821 ------------------CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTT 42862 ||| ||||| || || ||| | ||||| || ||||| || | Sbjct 67641 ACTAATAGACTAATTTTCCAGAGACGAAGGACTTCATCGCGACTTCGCTTGCCTTCTCTA 67700 Query 42863 CTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGC 42922 ||||| | ||| | |||||| | ||||||| || | || |||| ||| || Sbjct 67701 CTCGA--TGCTTCA-GAACAAGCTAACACAGGAGCGTATCTTCGAGATTATCAGGGACGC 67757 Query 42923 CGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA 42982 ||| ||||| | |||||| | || || | || || || | || | |||||||| Sbjct 67758 CGTCTGCATCGAACAAGAGTTCTTGACAGAGGCACTCCCAGTTGACATGATTGGCATGAA 67817 Query 42983 CCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGC-CAGATGG 43041 | || |||| | |||||| ||| ||||||||| || | || ||| | | | Sbjct 67818 CTGTCGTCTGATGTCTCAATACATCGAGTTCGTCGCCGATCACTTGCT-TGCGGAACTCG 67876 Query 43042 GTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGG 43101 | | | || ||||| | | || |||||||| ||||||||||||||| | | Sbjct 67877 GATGCGACAAGCTGTACAATGTGAAGAATCCATTCGACTTCATGGAGAACATCTCGATCG 67936 Query 43102 AGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | || ||||||||||| || |||||||| ||| |||| || ||| Sbjct 67937 ATGGAAAGACCAACTTCTTTGAGAAGCGTGTCTCCGAGTATCAG 67980 Score = 114 bits (126), Expect = 2e-20 Identities = 224/326 (69%), Gaps = 5/326 (2%) Strand=Plus/Minus Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880 ||| ||||| || || ||| | ||||| || ||||| || | ||||| | |||| | Sbjct 92852 CAGAGACGAAGGACTCCATCGTGACTTCGCTTGCCTTCTCTACTCGATGCT--TCAGA-A 92796 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 ||||| | ||||||| || | || |||| ||| ||||| |||||| |||| Sbjct 92795 CAAGCTAACACAGGAGCGTATCTTCGAGATTATCAAGGACGCCGTCTGCATCGAGCAGGA 92736 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAA 43000 |||| | || || | || || || | || | ||||||||| || |||| | Sbjct 92735 GTTCTTGACAGAGGCACTTCCAGTCGACATGATTGGCATGAACTGTCGTCTGATGTCTCA 92676 Query 43001 GTACATCCAGTACGTCGCCGACCATCTCCTGTGCC-AGATGGGTCTCAGCCGCCTCTACA 43059 |||||| ||| ||||||||| || | || ||| || | || | | || |||| Sbjct 92675 ATACATCGAGTTCGTCGCCGATCACTTGCT-TGCGGAGCTCGGATGCGACAAGCTGTACA 92617 Query 43060 ACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTT 43119 | | | || |||||||| ||||||||||||||| | || || ||||||||||| | Sbjct 92616 ATGTGAAGAATCCATTCGACTTCATGGAGAACATCTCGATAGATGGAAAGACCAACTTCT 92557 Query 43120 TCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||| ||| |||| || ||| Sbjct 92556 TCGAGAAGCGTGTCTCCGAGTATCAG 92531 >seq3663 Length=2118579 Score = 91.5 bits (100), Expect = 3e-13 Identities = 179/262 (68%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 244912 GGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCC-G 244970 || ||| || || |||||||| |||||| || || || || ||||| ||| | Sbjct 1959091 GGCGTAAAGAGCTTCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCATT-CGCATG 1959033 Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030 ||||||| ||| ||| | | | || ||| | || ||||||||| || || |||| Sbjct 1959032 GGCACATCAGAGACCAATTCTGATCCTTCTCGACACGCTTCATGAAGAGATCCGGAATCC 1958973 Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090 |||| || |||| | ||| | | | || ||| || | ||||||||||| | || Sbjct 1958972 AGAGAGCGAGGAACAAGTCACGAGCACGCTCCTCTTCTGGTCCAGTGTTCTTGCGGAGTG 1958913 Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150 || || || || || ||| | ||||| ||||| | ||||| |||| || || || | Sbjct 1958912 ACACGAACTCGAAAACATCGGCATGCCATGGCTCGAGGTAGATGGCGAATGCTCCTGGAC 1958853 Query 245151 GCTTGTTGCCTCCCTGGTCCAC 245172 ||||||| ||||| || || || Sbjct 1958852 GCTTGTTTCCTCCTTGATCGAC 1958831 Score = 91.5 bits (100), Expect = 3e-13 Identities = 339/523 (65%), Gaps = 19/523 (4%) Strand=Plus/Minus Query 244290 GTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGG 244349 || ||| ||||||||||| ||||| || | || || || || ||||| || | Sbjct 1959937 GTGTGACACCCCACATGTCGAACTGAAGTTGTCCTTTCGACACTGGAGATCCCTCATATG 1959878 Query 244350 TCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGA 244409 ||| || || ||||| | || |||| || || || | || | || |||||||||| Sbjct 1959877 TCGAATATGGTCCGTCTCTCTCAGCCAACTCGCAACTGGCTTCCAAAGCAGCGTAGTAGA 1959818 Query 244410 TGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT-TGCCGCAGGTGAAGGGGATGCCC 244468 | || || ||||| ||||||| | || | ||| | | || | ||||| || | | Sbjct 1959817 TCGTTTCAAAGATTCTCTTGTTGAGATCTCTGGCTTGTTTCG-AAGTGAATGGATAACGC 1959759 Query 244469 ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTG 244528 |||| ||||||| || || ||||| || || || | || || || | || ||| || Sbjct 1959758 ATCAACATGAAGCAATCAGCAAGTCCTTGAACTCCAAGACCAATAGGACGATGGCGCATG 1959699 Query 244529 TTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 || ||| ||||| || ||||| ||||| | ||||| | ||||||||| || Sbjct 1959698 TTCGAGTTACGAGCTTCTTCAACTGGGTAGTAGTTGACATCGATGATCTTGTTGAGATTC 1959639 Query 244589 CGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCG 244648 || || | | ||| ||||| ||| || || ||| ||| | ||| Sbjct 1959638 TTCGTTATGACTTTGGTGACTTCGGCAAGCTTCTTGAAATCGAACT------TCTTCTCT 1959585 Query 244649 GCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACC 244708 | || |||| | | || | || | |||| || || |||||||| || | | Sbjct 1959584 G-GA--GTGA-CGTAACGA-----TTCAAAGCGATCGAAGCAAGATTGCAGACAGCGATC 1959534 Query 244709 TCCTC-CGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCC 244767 || || ||| | | ||||| | || || ||||||||||| |||||||||||| || Sbjct 1959533 TCATCTGGAGCT-GAGTACTCCATGATTTCAGTGCAGAGGTTGGAGCACTTGATGGTTCC 1959475 Query 244768 CAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 || | || || ||||||||| ||| || || |||||| Sbjct 1959474 GAGATTTTGCTGGTTGGACTTGCGATTGGCAGCATCTTTGTAG 1959432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944295878439200