Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq1090 659 0.0 >seq1090 Length=5395 Score = 659 bits (730), Expect = 0.0 Identities = 771/1037 (74%), Gaps = 20/1037 (2%) Strand=Plus/Plus Query 43786 CGAAGTCATACACCCGGCTTTCGCAGGTGGTGCGGGAAACAGGCCTCCTGAATCGCGCAC 43845 ||||| | ||||||||| | || ||||| || |||||| | || |||||| |||| | | Sbjct 3068 CGAAGGCCTACACCCGGGTCTCCCAGGTCGTTCGGGAATCCGGGCTCCTGCGTCGCAC-C 3126 Query 43846 CCGTC-TTCTA--TGTCC-TCGTGGCCGG--TGCC-CTGGCTCTCGGCTTCGCGGTATGC 43898 |||| ||||| || || ||| ||| ||| || ||||| ||| ||| Sbjct 3127 CCGTGGTTCTACCTGGCCGTCGGAACCGCGTTGCTGCTCGCTCTGGGCGGAGCG------ 3180 Query 43899 ATCACGGGCTTCCTCCTGTTGGGCGACAGCTGGTTCCAGCTCCTTATCGCCGCCGCTCTC 43958 ||||| |||||| ||||| |||| || | ||||| |||||| || ||||||||||| ||| Sbjct 3181 ATCACAGGCTTCATCCTGCTGGGGGAGACCTGGTACCAGCTGCTCATCGCCGCCGCGCTC 3240 Query 43959 GGCATCCTGTTCACCCAGGTGGCTTTCCTCGCGCACGAGGCGGCACACCGGCAGATNNNN 44018 |||||| | ||||||||| | || |||||||||||||||||||| ||||||||||| Sbjct 3241 GGCATCATCTTCACCCAGATCGCGTTCCTCGCGCACGAGGCGGCGCACCGGCAGATCCTG 3300 Query 44019 NNNNNNNNNNNNNNNNNCCTTCGGCTCGCGAGGGTCCTCGGCGGGATCGTCGGCATGAGC 44078 | |||||||| || |||||| ||| ||||||||||| Sbjct 3301 GCGACGGGGCCGGCGAACGACCGGCTCGCCCGGATCCTCGCCGGCGCGATCGGCATGAGC 3360 Query 44079 TATTCCTGGTGGGACTCGAAGCACACGCGGCACCATGGCAACCCGAATCGTGTCGGCAAG 44138 || || |||||||| ||||||||| |||||||||| |||||||| || ||||||||| Sbjct 3361 TACTCGTGGTGGGATTCGAAGCACTCGCGGCACCACTCGAACCCGAACCGGGTCGGCAAG 3420 Query 44139 GATCCTGATATCGAGGTTGATACGATCTCGTTCCTCGACGAGGACGCCTCCCGATCGCGT 44198 ||||| || |||||||| || |||||||| |||||||| |||||||| | | || Sbjct 3421 GATCCCGACATCGAGGTCGACACGATCTCCTTCCTCGAGGAGGACGCGGTCGAGGCCCGC 3480 Query 44199 GGCGTCGTCCGATTGATCACGAGGAAGCAGGGATGGCTGTTCTTCCCCCTCCTGACGCTA 44258 || || || || |||||| | ||||| ||| | |||||||| || || || || Sbjct 3481 GGGTTCCGACGCCTGCTCACGAAGCGCCAGGGCTGGTTCTTCTTCCCGCTGCTCACCCTG 3540 Query 44259 GAGGGCATCAATCTCCACGCCTTGAGCGTCCGACACCTT-CTCTCCTCGCACCCGGTTCG 44317 || || | || || ||| |||| || | ||||| | || || ||| ||| || Sbjct 3541 GAAGGGCTGAACCTGCACCGGCAGAGCTTCGGGCACCTCGCGAGCCGCGAACC-GGTGCG 3599 Query 44318 TGGCCGCTGGCAAGAGCTGGGGATGCTCGCCGTGCGATTCTCGGCCGTGCTCGTCCCGGT 44377 || |||||| ||| | || || |||||| || ||| || | |||||||| || Sbjct 3600 GGGGCGCTGGATCGAGATCGGCATCATCGCCGCCCGCTTCGCGCTGATCCTCGTCCCCGT 3659 Query 44378 GTTTCTCATGCTCCCTCTTGGCATGGCGTTCGCCTTCATGGGCGTCCAGCTCGCCGTCTT 44437 ||| ||| ||||||| | |||||||| | ||| |||||||| || ||| |||| || || Sbjct 3660 GTTCCTCCTGCTCCCGTTCGGCATGGCCTGCGCGTTCATGGGGGTGCAGTTCGCGGTGTT 3719 Query 44438 CGGCGTGTACATGGGGGCCTCGTTCGCTCCGAACCACAAGGGCATGCCGATCATCGCGTC 44497 |||||| |||||||| ||||||||||| || |||||||||||||||||| | |||||| Sbjct 3720 CGGCGTCTACATGGGCGCCTCGTTCGCGCCCAACCACAAGGGCATGCCGGTGATCGCGCA 3779 Query 44498 CGATGCCCGCCTCGACTTCTTCACCAAGCAGGTGGGCACCTCCCGCAACATACGCGGAGG 44557 |||||| |||||||||||||| ||||||||| ||||||| |||||||| || || || Sbjct 3780 CGATGCGAAGCTCGACTTCTTCACGAAGCAGGTGCGCACCTCGCGCAACATCCGGGGCGG 3839 Query 44558 CTGGTGGGCCACCTGGCTCATGGGCGGGCTGAACTACCAGATCGAGCACCACCTCTTCCC 44617 ||||||||| || |||||||||||||| ||||||| ||| | ||||||||||| ||||| Sbjct 3840 CTGGTGGGCGACGTGGCTCATGGGCGGCTTGAACTATCAGGTGGAGCACCACCTGTTCCC 3899 Query 44618 CAGCATGCCTCGGATCCATCTGTCCCAGGCAAGGAAGATCGTGCGCGAGCACTGCACCGC 44677 |||||| | || || ||| | | ||| | ||||||||||||||||| |||| Sbjct 3900 GAGCATGGCGCGCCCGCACCTGGCACGGGCGCGAGCCATCGTGCGCGAGCACTG--CCGC 3957 Query 44678 AAAC--GACGTGCCGTACACCGAGACCACACTGCTTCGGTCATACGCCATCGTGATCGAC 44735 | | | || |||||||| || ||| | || ||||| ||||| |||||||||| | Sbjct 3958 ACGCTGGGGGTCCCGTACACGGAAACCTCGCTCTGGCGGTCGTACGCGATCGTGATCGCC 4017 Query 44736 TACCTCAACCGCGTCGGCCTGGCAGCGCGCGACCCCTTCGACTGCCCCATTACCGCAGAA 44795 ||||||||||| ||||| || || ||||| || || ||||| ||||| || ||||| || Sbjct 4018 TACCTCAACCGGGTCGGGCTCGCTGCGCGGGATCCGTTCGAGTGCCCGATCACCGCCGAG 4077 Query 44796 TACCGGCGCACCTGAAC 44812 |||||||| ||||||| Sbjct 4078 TACCGGCGTGCCTGAAC 4094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148239939236580