Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3618 138 3e-27 seq3658 136 9e-27 seq3649 120 7e-22 seq265 120 7e-22 seq3544 114 3e-20 seq3660 91.5 3e-13 >seq3618 Length=512689 Score = 138 bits (152), Expect = 3e-27 Identities = 171/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||||| || || | ||| | ||| || || ||||| || |||| Sbjct 495183 CATG-CCTCCACGGAGTCGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGT 495125 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || ||||| || || | ||| ||||| |||||||| || | || ||| Sbjct 495124 CGGAAAGAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTG 495065 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||||||||||| || || ||||| || || || ||||| || |||| ||| | || Sbjct 495064 CTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTT 495005 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || ||||| ||||| ||||| ||||| || ||||| ||||| || |||||| Sbjct 495004 CGACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATTTGCATT 494952 Score = 132 bits (146), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||||| || || | ||| | ||| || || ||||| || |||| Sbjct 509367 CATG-CCTCCACGGAGTCGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGT 509309 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || ||||| || || | ||| ||| | |||||||| || | || ||| Sbjct 509308 CGGAAAGAGTACGTCCATCCTCAAGTTGCTTTTCAGCGAAGATGAGTCTTTGCTGATCTG 509249 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||||||||||| || || ||||| || || || ||||| || |||| ||| | || Sbjct 509248 CTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTT 509189 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || ||||| ||||| ||||| ||||| || ||||| ||||| || |||||| Sbjct 509188 CGACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATTTGCATT 509136 >seq3658 Length=1447888 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||||| ||| || ||||||||||| ||||| | | || ||||| || Sbjct 42716 AGAACGAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCCGACAAGGTCCGTCCATCC 42775 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | ||| ||||| ||||| || || | ||| ||| ||||||||| ||||| || Sbjct 42776 TCGAGTTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCTGGTGGGATTCCCTCTTTGTCT 42835 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || ||||| || || | |||| | ||| || ||||| || || ||| Sbjct 42836 TGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACCTCGAGGGTAATAGTC 42895 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || ||||||||||| ||||||||| Sbjct 42896 TTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 42928 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || |||||||||| ||| || || |||||||||||||| | | Sbjct 42473 CCTCCACGGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGAG 42532 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||||||||| | || ||||| |||||||| || | ||| ||| |||| Sbjct 42533 AGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGG 42592 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || ||||| || || || || | || | ||| || Sbjct 42593 ATCCCTTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCAGAAGCTTCAACC 42652 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 42653 TCGAGGGTGATGGTCTTTCCAGTGAGCGTCTTCACGAAGATTTGCAT 42699 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | ||| | || |||||||||| || || || ||||| || ||||| | Sbjct 41743 TCCACCTCTGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 41802 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | |||||||| ||||| | ||| ||||| |||||||| || | ||| ||| ||| Sbjct 41803 CAAGGTGCGTCCATCTTCGAGTTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTGG 41862 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| || || || || || || ||||| ||||| || | || | ||| || Sbjct 41863 AATTCCTTCCTTGTCTTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGAGGCTTCGAC 41922 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 41923 CTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 41970 Score = 123 bits (136), Expect = 6e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || ||| || || || | ||| |||||||||| || || |||||||| || ||||| Sbjct 41010 ATCTCCTCCACGAAGACGAAGAACGAGATGAAGAGTTGACTCCTTTTGGATGTTGTAGTC 41069 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 | | || ||||| || || | || ||||| ||||| |||| ||| ||||| Sbjct 41070 CGACAAGGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCTGG 41129 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||| ||||| || || ||||| || || || ||||| || || | || | ||| Sbjct 41130 TGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTC 41189 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || || || ||||||||||| |||||||| Sbjct 41190 GACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 41240 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| || ||||| ||||| | ||| ||||| |||||| Sbjct 41278 TCCTTCTGGATGTTGTAGTCAGAGAGTGTACGTCCATCTTCGAGTTGCTTTCCAGCGAAG 41337 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | || || ||||||||| ||||| || ||||| || ||||| || ||| Sbjct 41338 ATAAGTCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTT 41397 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || | ||||| ||||| ||||| |||||||||||| Sbjct 41398 TCAATGGTGTCGGAAGCCTCCACCTCCAAAGTGATAGTCTTTCCGGTGAGAGTCTTGACG 41457 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 41458 AAGATTTGCATT 41469 Score = 120 bits (132), Expect = 7e-22 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||||| || || | ||| | ||| ||||| ||||| || |||| Sbjct 42241 CATG-CCTCCACGGAGTCGGAGGACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGT 42299 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || ||||| || || | ||| ||||| || ||||| || | || ||| | Sbjct 42300 CGGAAAGAGTACGTCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGTCTTTGCTGA---T 42356 Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| ||||||||| || || ||||| || || |||||||| || || | || | Sbjct 42357 CTGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAAG 42416 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || ||||| ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 42417 CTTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 42471 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||| || |||| | || ||||| || || | ||| ||||| ||||| Sbjct 43514 TTCCTTTTGGATATTGTAATCGGACAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAA 43573 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | || ||| ||| |||||||| || || ||||| || || || ||||| Sbjct 43574 GATGAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 43633 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || | ||| || ||||| ||||| ||||| || || || ||||| || Sbjct 43634 CTCAATGGTGTCCGAGGCTTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCAC 43693 Query 288462 GAATATCTGCATT 288474 ||| || |||||| Sbjct 43694 GAAGATTTGCATT 43706 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| || | |||||| ||||||||| ||||| || ||||| || || Sbjct 43338 CCAGCGAAGATAAGTCTTTGTTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTTGCC 43397 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || | ||| | ||| |||||||| ||||| ||||| || || ||| Sbjct 43398 TTGACGTTCTCGATTGTGTCGGAAGCTTCCACTTCGAGTGTGATAGTCTTTCCAGTAAGA 43457 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||||||||| ||||||||| Sbjct 43458 GTCTTGACGAAGATCTGCATT 43478 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| || | || ||| ||||||||| ||||| || ||||| || || Sbjct 43063 CCAGCGAAGATAAGTCTTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTTGCC 43122 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || | ||| | ||| |||||||| ||||| ||||| || || ||| Sbjct 43123 TTGACGTTCTCGATTGTGTCGGAAGCTTCCACTTCGAGTGTGATAGTCTTTCCAGTAAGA 43182 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||||||||| ||||||||| Sbjct 43183 GTCTTGACGAAGATCTGCATT 43203 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| || | || ||| |||||||||||| || || || || || || Sbjct 41603 CCAGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTAGCC 41662 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || | || | ||| |||||||| ||||| ||||| || |||| | Sbjct 41663 TTGACGTTCTCAATGGTGTCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAA 41722 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||||||||| ||||||||| Sbjct 41723 GTCTTGACGAAGATCTGCATT 41743 >seq3649 Length=974952 Score = 120 bits (132), Expect = 7e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 269149 ATGATCGGTATGAA-TGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTAT 269207 ||||| || ||||| || || ||| ||| |||||| ||||| ||||| || |||| | Sbjct 92707 ATGATTGGCATGAACTGTCG-TCTGATGTCTCAATACATCGAGTTCGTCGCCGATCACTT 92649 Query 269208 CTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGA 269267 | ||| ||||| | || || |||||||| ||||||||| |||| ||| ||||| Sbjct 92648 GCTTGCGGAGCTCGGATGCGACAAGCTGTACAATGTGAAGAATCCATTCGACTTCATGGA 92589 Query 269268 ACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACG 269327 || ||| | || |||||||| ||||||||||| ||||||||| ||| ||||| || Sbjct 92588 GAACATCTCGATAGATGGAAAGACCAACTTCTTCGAGAAGCGTGTCTCCGAGTATCAGCG 92529 Query 269328 TCCTGGTGTAATG 269340 ||| || || ||| Sbjct 92528 TCCAGGAGTGATG 92516 >seq265 Length=4024 Score = 120 bits (132), Expect = 7e-22 Identities = 140/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 |||||||| | || || |||||||||||||||||||| ||||| || | || || ||| Sbjct 3538 CAAGCGTCGACTTCTGAATTGTATGGAAAAGTGCAAGAGATTCCACAAAGTGAGAAGACT 3597 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGT-AA 72535 || || ||||| || || |||| |||||| ||| |||| | |||||||| ||| Sbjct 3598 CCATTCTATCCAAGATCTCCATACGCTGTTGCCAAGATGTATGGATATTGGAT-TGTGGT 3656 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGT-TTCAATCACGAGA 72594 || || |||||| |||| ||||||| || ||| || | || || | |||||||| |||| Sbjct 3657 TAACTATCGTGAGGCGTACAACATGTTTGCATGTAA-TGGAATTCTCTTCAATCATGAGA 3715 Query 72595 GTCC 72598 |||| Sbjct 3716 GTCC 3719 >seq3544 Length=228915 Score = 114 bits (126), Expect = 3e-20 Identities = 139/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 |||||||| | || || |||||||||||||| ||||| ||||| || | || || ||| Sbjct 4169 CAAGCGTCGACTTCTGAATTGTATGGAAAAGTACAAGAGATTCCACAAAGTGAGAAGACT 4110 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGT-AA 72535 || || ||||| || || |||| |||||| ||| |||| | |||||||| ||| Sbjct 4109 CCATTCTATCCAAGATCTCCATACGCTGTTGCCAAGATGTATGGATATTGGAT-TGTGGT 4051 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGT-TTCAATCACGAGA 72594 || || |||||| |||| ||||||| || ||| || | || || | |||||||| |||| Sbjct 4050 TAACTATCGTGAGGCGTACAACATGTTTGCATGTAA-TGGAATTCTCTTCAATCATGAGA 3992 Query 72595 GTCC 72598 |||| Sbjct 3991 GTCC 3988 >seq3660 Length=1640336 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||||||||| | || ||| ||| |||||||| || || ||||| || || Sbjct 486263 CCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCC 486322 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | |||| | || |||||||| || || ||||| || |||||| Sbjct 486323 TTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGA 486382 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| Sbjct 486383 GTCTTGACGAAGATTTGCAT 486402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179598930438260