Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq265 120 7e-22 seq3544 114 3e-20 seq3649 89.7 1e-12 seq3635 84.2 5e-11 >seq265 Length=4024 Score = 120 bits (132), Expect = 7e-22 Identities = 140/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 |||||||| | || || |||||||||||||||||||| ||||| || | || || ||| Sbjct 3538 CAAGCGTCGACTTCTGAATTGTATGGAAAAGTGCAAGAGATTCCACAAAGTGAGAAGACT 3597 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGT-AA 68524 || || ||||| || || |||| |||||| ||| |||| | |||||||| ||| Sbjct 3598 CCATTCTATCCAAGATCTCCATACGCTGTTGCCAAGATGTATGGATATTGGAT-TGTGGT 3656 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGT-TTCAATCACGAGA 68583 || || |||||| |||| ||||||| || ||| || | || || | |||||||| |||| Sbjct 3657 TAACTATCGTGAGGCGTACAACATGTTTGCATGTAA-TGGAATTCTCTTCAATCATGAGA 3715 Query 68584 GTCC 68587 |||| Sbjct 3716 GTCC 3719 >seq3544 Length=228915 Score = 114 bits (126), Expect = 3e-20 Identities = 139/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 |||||||| | || || |||||||||||||| ||||| ||||| || | || || ||| Sbjct 4169 CAAGCGTCGACTTCTGAATTGTATGGAAAAGTACAAGAGATTCCACAAAGTGAGAAGACT 4110 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGT-AA 68524 || || ||||| || || |||| |||||| ||| |||| | |||||||| ||| Sbjct 4109 CCATTCTATCCAAGATCTCCATACGCTGTTGCCAAGATGTATGGATATTGGAT-TGTGGT 4051 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGT-TTCAATCACGAGA 68583 || || |||||| |||| ||||||| || ||| || | || || | |||||||| |||| Sbjct 4050 TAACTATCGTGAGGCGTACAACATGTTTGCATGTAA-TGGAATTCTCTTCAATCATGAGA 3992 Query 68584 GTCC 68587 |||| Sbjct 3991 GTCC 3988 >seq3649 Length=974952 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 243565 ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTC 243624 ||||||||||||| | || ||| || |||||||| ||||| ||||| | | | | Sbjct 92704 ATTGGCATGAACTGTCGTCTGATGTCTCAATACATCGAGTTCGTCGCCGATCACTTGCTT 92645 Query 243625 ATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTC 243684 | ||| || | || || ||||||| ||||| || || | ||| |||||| | Sbjct 92644 GCGGAGCTCGGATGCGACAAGCTGTACAATGTGAAGAATCCATTCGACTTCATGGAGAAC 92585 Query 243685 ATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCT 243744 || ||| | | || || || ||||||||||| ||||||||| || ||||| || || Sbjct 92584 ATCTCGATAGATGGAAAGACCAACTTCTTCGAGAAGCGTGTCTCCGAGTATCAGCGTCCA 92525 Query 243745 GGTGTGATG 243753 || |||||| Sbjct 92524 GGAGTGATG 92516 >seq3635 Length=855266 Score = 84.2 bits (92), Expect = 5e-11 Identities = 143/207 (69%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 243592 CAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTAC 243651 || |||||| | | ||| ||||| | | | || | ||| || | |||||| | ||| Sbjct 582955 CAATACATCAAGTACGTCGCCGATCACTTGTTGGAGGAGCTGGGATTCGAGAAACTCTAC 582896 Query 243652 AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTC 243711 || | | ||||| |||| |||||||| ||| ||| | | ||||| || |||||| Sbjct 582895 CACACAATCAACCCATTTGATTTTATGGAAAACATCTCGATCGATGGGAAGACCAACTTC 582836 Query 243712 TTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATG---AAACCAGAGGATAAC 243768 ||||| |||||||| || |||||||| |||| |||||| | |||||||| Sbjct 582835 TTCGAGAAGCGTGTGTCAGAGTATCAACGGTCTGGCGTGATGGCTGACGCAGAGGATCGT 582776 Query 243769 ATTTTTGCGATTGATGATGATTTTTAA 243795 ||||| |||||| |||||||| Sbjct 582775 GTTTTTCGTCTTGATGCAAATTTTTAA 582749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102828140514500