Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3663 129 7e-25 seq3649 91.5 2e-13 >seq3663 Length=2118579 Score = 129 bits (142), Expect = 7e-25 Identities = 682/1085 (63%), Gaps = 67/1085 (6%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| || ||||| || || |||||||| | || | |||||||| | | || Sbjct 1960476 GTAGTACATTCCAGTCTTAAGGCCTTGCTTCCATCCGTAGAAGTGCATCGAAGTGA--TT 1960419 Query 113662 GGAGAGTG--TTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGT 113719 | || || |||| | ||||| | || | | ||| |||||||| ||||| | Sbjct 1960418 GCAGCGTAGCTTGGTTTAGCCATGTGAATATTGAGAGATTGAGATTGATCAATGAATGCT 1960359 Query 113720 CCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAG 113779 |||||||| || ||||| ||||| | ||||| ||||||||||||||| ||| Sbjct 1960358 CCACGATCAGCAGCCATCTCAATGATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAG 1960299 Query 113780 AGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACC 113839 || | |||||| ||| ||||||| || ||| || || ||||| || ||| | Sbjct 1960298 AGCTCCTTAATGTCAGCTGGGATTTCTGGGATGTTCTGAATGGA---TCCGTTGTTGGCT 1960242 Query 113840 ATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 113896 |||| | | |||||| || | | ||| | || ||| | ||||| | | | Sbjct 1960241 ATGAGGCGGTTCTTCATTTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATA 1960182 Query 113897 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTG 113956 || |||||| | || || || | || || | |||||| || | ||| Sbjct 1960181 TGTGGATTGACTATCTGGAAGTCTCCAGAAAGAACACGACGAGAATAGATGTTTGAGGTG 1960122 Query 113957 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGT 114016 |||||||||| |||||||||| || | ||||| || || || || || ||||| || Sbjct 1960121 TATGGCTCAATCGACTCATTGTTTCCAAGAATTTGAGCAGTAGAAGCAGTTGGCATTGGA 1960062 Query 114017 GCCATGAGAAGGCTGTTACGGAGACCCT-----------TTTCCCT---AAT-------- 114054 ||||| ||||| ||||| |||| || | |||| | ||| Sbjct 1960061 GCCATCAGAAGACTGTTGCGGATTCCGTGTCTGAAAAAATTTCAATTAAAATTATATTGT 1960002 Query 114055 ---------------------GCG--TTCCTTG---AGGGCGTCCCAGTCGTAGTTGA-- 114086 ||| || ||| || ||| |||||||| | |||| Sbjct 1960001 GATTCTCAATTCACTTACGTGGCGATTTTTTTGCGAAGAGCGGCCCAGTCGCA-TTGATC 1959943 Query 114087 GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCT 114146 | || || | | | |||||| || ||||| || |||| || |||| ||||||| Sbjct 1959942 GGTTGGTGTGACAC-CCCACATGTCGAACTGAAGTTGTCCTTTCGACACTGGAGATCCCT 1959884 Query 114147 CAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGT 114206 || ||||| ||||| || || ||| ||||| ||| | || || || | || |||| Sbjct 1959883 CATATGTCGAATATGGTCCGTCTCTCTCAGCCAACTCGCAACTGGCTTCCAAAGCAGCGT 1959824 Query 114207 GATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA 114266 || || || ||||| || | || | | |||| | | ||| || | || Sbjct 1959823 AGTAGATCGTTTCAAAGATTCTCTTGTTGAGATCTCTGGCTTGTTTCGAAGTGAATG-GA 1959765 Query 114267 GTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGT 114325 ||| ||| || || ||| || || ||||| || || || ||||| || ||||| Sbjct 1959764 TAACGCATCAACATGAAGCAATCAGCAAGTCCTTGAACTCCAAGACCAATAGGACGATGG 1959705 Query 114326 CTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTT 114385 | ||| || || || ||||| || || || || | || |||||| | | | || Sbjct 1959704 CGCATGTTCGAGTTACGAGCTTCTTCAACTGGGTAGTAGTTGACATCGATGATCTTGTTG 1959645 Query 114386 AGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTC 114445 ||||| || || | || || |||| ||| |||||| | | |||| |||| | || Sbjct 1959644 AGATTCTTCGTTATGACTTTGGTGACTTCGGCAAGCTTCTTGAAATC-GAACTTC--TTC 1959588 Query 114446 TCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 114505 ||| | |||| || | | ||||| || || ||||| || |||| | ||||||| Sbjct 1959587 TCTGGAGTGACGTAACGATTCAAAGCGATCGAAGCAAGATTGCAGACAGCGATCTCATCT 1959528 Query 114506 TTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 114565 | | | |||||| || ||||| || || | || || | ||| ||||| || | || Sbjct 1959527 GGAGCTGAGTACTCCATGATTTCAGTGCAGAGGTTGGAGCACTTGATGGTTCCGAGATTT 1959468 Query 114566 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 114625 | || || ||||| || ||||| ||||| |||||||| || ||||| Sbjct 1959467 TGCTGGTTGGACTTGCGATTGGCAGCATCTTTGTAGGTGATGTATGGAAGTCCAGTCTCA 1959408 Query 114626 GTTTG 114630 |||| Sbjct 1959407 ATTTG 1959403 >seq3649 Length=974952 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 126077 GAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAA 126136 |||||||| ||||| ||| || |||||||||||| || |||||||| | |||||| Sbjct 67608 GAGATGAGCTCATTGGAGTGTGTCAATCCTGGCATGAGTCCTCGCTTCTTGAGCCAGAAG 67549 Query 126137 ATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGC 126196 || | || || || |||||||||||| || ||| ||||| || | |||||| Sbjct 67548 ATTGAGGCGAACGATCCACTGAAGAAGATTCCTTCGACAGCGGCGAAGGCGATGAGACGT 67489 Query 126197 TCAGCAAAGGAGCGCGACTTTGTGTC---AAACCACTTCATCGCCCACTGCGCCTTTTTC 126253 || || || || || ||| |||| | ||||||||| ||||| | ||||| ||| Sbjct 67488 TCGGCGAACGA---CGCCTTCTTGTCCGAGATCCACTTCATAGCCCAGTCGGCCTTCTTC 67432 Query 126254 TCGAT 126258 | ||| Sbjct 67431 TTGAT 67427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597326196403600