Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3658 114 1e-20 seq3618 109 6e-19 seq3667 89.7 6e-13 seq3627 84.2 2e-11 seq3596 84.2 2e-11 seq3534 84.2 2e-11 seq3473 84.2 2e-11 seq3294 84.2 2e-11 seq2553 84.2 2e-11 seq731 84.2 2e-11 seq3668 82.4 8e-11 seq3426 82.4 8e-11 >seq3658 Length=1447888 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | ||||| || | ||| |||||||| ||||||||||| | | Sbjct 43479 CCTCCTCTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCGGAC 43538 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || || ||||| |||||||| ||||||| ||||| || | ||| Sbjct 43539 AAAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGTGGA 43598 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||||| ||| || |||| || | | ||||| | ||| || Sbjct 43599 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCAACC 43658 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||| |||||||| || || || || ||||| || |||||||||||| Sbjct 43659 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCATT 43706 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | || | ||| | ||| |||||| || |||||||| || | Sbjct 43707 CCTCCTCTGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGAA 43766 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| | |||| || |||||||| || ||||| ||||||| |||||| || | ||| Sbjct 43767 AGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGG 43826 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||| ||||| ||| || ||||| || | | |||||| | ||||| Sbjct 43827 ATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGGAAGCCTCCACC 43886 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || | ||| || || ||||||||||| Sbjct 43887 TCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCAT 43933 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | || | ||| | ||| |||||| || ||||| || || | Sbjct 42472 ACCTCCACGGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGA 42531 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | |||| || |||||||| || ||||| ||||||| |||||| || | ||| Sbjct 42532 GAGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGG 42591 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||| ||| || ||||| || | | ||||| | ||| || Sbjct 42592 GATCCCTTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCAGAAGCTTCAAC 42651 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||||||| || || || |||||||| || ||||||||||| Sbjct 42652 CTCGAGGGTGATGGTCTTTCCAGTGAGCGTCTTCACGAAGATTTGCAT 42699 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | ||||| || | || |||||| || || ||||| |||| Sbjct 41241 ACCTCCACGGAGACGGAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 41300 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || || ||||| |||||||| || |||| |||||||| | ||| Sbjct 41301 GAGTGTACGTCCATCTTCGAGTTGCTTTCCAGCGAAGATAAGTCTTTGCTGGTCTGGTGG 41360 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||| ||||| ||| || ||||| | | | |||||| | ||||| Sbjct 41361 GATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTTTCAATGGTGTCGGAAGCCTCCAC 41420 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||| || || || || || ||||| || |||||||||||| Sbjct 41421 CTCCAAAGTGATAGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCATT 41469 >seq3618 Length=512689 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | ||| |||||| || || ||||| || | ||||| || | || || Sbjct 495161 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCA 495102 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| |||||||| ||||||| ||||| || ||||| | | |||||||| | Sbjct 495101 AGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTGTCTTGG 495042 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| || | | |||||| | ||| || |||| |||||||| || Sbjct 495041 ATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATGGTCTTT 494982 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || ||||| || |||||||||||| Sbjct 494981 CCGGTGAGGGTCTTCACGAAGATTTGCATT 494952 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | ||| |||||| || || ||||| || | ||||| || | || || Sbjct 509345 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCA 509286 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| ||||||| ||||||| ||||| || ||||| | | |||||||| | Sbjct 509285 AGTTGCTTTTCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTGTCTTGG 509226 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| || | | |||||| | ||| || |||| |||||||| || Sbjct 509225 ATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATGGTCTTT 509166 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || ||||| || |||||||||||| Sbjct 509165 CCGGTGAGGGTCTTCACGAAGATTTGCATT 509136 >seq3667 Length=2326506 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 56983 AAATTAACGTTTATGAAAAA--TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGC 57040 |||||| ||| ||||||| |||||||| |||| | ||| |||||| |||||| | Sbjct 2208749 AAATTACAATTTTTGAAAAAAGTTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCAT 2208690 Query 57041 GTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 ||||||| || ||||||||||||||||||||||||| Sbjct 2208689 GTGACAGACGCGGATACTCACCACTATACTACCGAGGA 2208652 >seq3627 Length=744665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 593972 AAAAATGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 594031 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 594032 TCACCACTATACTACCGAGGA 594052 >seq3596 Length=472359 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 187987 AAAAATATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 187928 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 187927 TCACCACTATACTACCGAGGA 187907 >seq3534 Length=283482 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 148646 AAAAATATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 148705 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 148706 TCACCACTATACTACCGAGGA 148726 >seq3473 Length=180295 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 78505 AAAAAGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 78564 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 78565 TCACCACTATACTACCGAGGA 78585 >seq3294 Length=22485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 10802 AAAAAGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 10743 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 10742 TCACCACTATACTACCGAGGA 10722 >seq2553 Length=13626 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 7513 AAAAAGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 7572 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 7573 TCACCACTATACTACCGAGGA 7593 >seq731 Length=3940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 1415 AAAAATGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 1474 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 1475 TCACCACTATACTACCGAGGA 1495 >seq3668 Length=2408484 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || |||| ||||||| |||| | ||| |||||| |||||| | ||||||| || | Sbjct 1494804 ATAAAAAGATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 1494745 Query 57055 TACTCACCACTATACTACCGAGGAT 57079 ||||||||||||||||||||||||| Sbjct 1494744 TACTCACCACTATACTACCGAGGAT 1494720 >seq3426 Length=108072 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAAT-TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || ||| Sbjct 80769 AAAAATGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATA 80828 Query 57057 CTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||| Sbjct 80829 CTCACCACTATACTACCGAGGA 80850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543187880112800