Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3658 113 5e-20 >seq3658 Length=1447888 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||||| || || || |||||||| || | | |||||| | ||| Sbjct 41759 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAAGGTGCGTCCATCT 41818 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| || || | ||||| | |||||| || || ||||||||||| || ||| Sbjct 41819 TCGAGTTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCT 41878 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || ||| ||| || || || | ||| | |||| Sbjct 41879 TGAATCTTAGCCTTCACATTTTCAATGGTGTCAGAGGCTTCGACCTCAAGAGTGATGGTC 41938 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | || || ||||| || ||||| Sbjct 41939 TTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 41970 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || || || ||||| || | | || | ||||| Sbjct 43722 AGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGAAAGAGTTCTTCCGTCT 43781 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| ||||| | ||||| | |||||| || || || ||||| ||||| ||| Sbjct 43782 TCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCTTTGTCT 43841 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| ||| | || || || ||||| || | || | ||| Sbjct 43842 TGGA-TCTTGGCTTTGACATTCTCAATGGTGTCGGAAGCCTCCACCTCCAAGGTGATGGT 43900 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| ||||| ||||| |||||||| Sbjct 43901 TTTTCCAGTCAACGTTTTCACGAAGATTTGCAT 43933 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || || || || || || | || || | ||||| Sbjct 42488 AGAACGAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGAGAGAGTTCTTCCGTCT 42547 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| ||||| | ||||| | |||||| || || || || ||||| || ||| Sbjct 42548 TCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCT 42607 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| ||| | || ||| || || || || | || | ||| Sbjct 42608 TGGA-TCTTGGCTTTGACATTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATGGT 42666 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | || || ||||| |||||||| Sbjct 42667 CTTTCCAGTGAGCGTCTTCACGAAGATTTGCAT 42699 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| || |||||||| | | || || | || ||||| ||||| || Sbjct 43509 GTAGATTCCTTTTGGATATTGTAATCGGACAAAGTACGTCCATCCTCAAGTTGCTTTCCA 43568 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| | ||||| || || ||||||||||| || ||||| || || ||| Sbjct 43569 GCGAAGATGAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTG 43628 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || ||| || || || | || | |||||| || || | || Sbjct 43629 ACGTTCTCAATGGTGTCCGAGGCTTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTC 43688 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| ||||||||| Sbjct 43689 TTCACGAAGATTTGCATT 43706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499621878794800