Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq3470 86.0 5e-12 seq2322 84.2 2e-11 >seq3470 Length=172114 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 118177 TTCCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATAC 118236 |||| || | ||| || || || |||||||||| || || || | |||||| || | || Sbjct 54851 TTCCATCTCTACCTGCTCTACCAGTCTCTTGATAGTATCCTTCGATTGATTTCGGAAGAC 54910 Query 118237 TGTGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCG 118296 ||| ||| || || || || || || ||||||||||| |||||||| || || || || | Sbjct 54911 TGTAATGGATGACAAATCGAACATCTGGTTTATCGATTCCCATCCCAAATGCAATTGTAG 54970 Query 118297 AACATATCAC 118306 || ||||| Sbjct 54971 CGCAAATCAC 54980 >seq2322 Length=9092 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 118163 ACACTCCGACAGTTTTCCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAG 118222 ||| | |||| | |||| || | ||| || || || |||||||||| || || || | Sbjct 4542 ACAATACGACGGCATTCCATCTCTACCAGCTCTACCAGTCTCTTGATAGTATCCTTCGAT 4601 Query 118223 TGATTTGGGCATACTGTGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCC 118282 |||||| || | ||||| ||| || || || || || || ||||||||||| ||||| || Sbjct 4602 TGATTTCGGAAGACTGTAATGGATGACAAATCGAACATCTGGTTTATCGATTCCCATTCC 4661 Query 118283 GAACGCTATCGTCGAACATATCAC 118306 || || || || | || ||||| Sbjct 4662 AAATGCAATTGTAGCGCAGATCAC 4685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381755724018480