Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3649 95.1 1e-14 seq3658 86.0 6e-12 >seq3649 Length=974952 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 52609 TCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGC 52668 ||||||| || || ||||| ||||||| || || | || || || ||||| || Sbjct 92763 TCAAGGACGCCGTCTGCATCGAGCAGGAGTTCTTGACAGAGGCACTTCCAGTCGACATGA 92704 Query 52669 TGGGCATGAACGCGCAGTCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTG 52727 | ||||||||| | ||| |||| | ||||||||||| || || |||| || | Sbjct 92703 TTGGCATGAACTGTC-GTCTGATGTCTCAATACATCGAGTTCGTCGCCGATCACTTGCTT 92645 Query 52728 GTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAA 52786 | | ||||||| || | ||| | ||| | ||||| || || || ||| | || Sbjct 92644 GCGGAGCTCGGAT-GCGACAAGCTGTACAATGTGAAGAATCCATTCGACTTCATGGAGAA 92586 Query 52787 CATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAGCGT 52844 ||| ||| | || || ||||||||||| ||||||||||| ||| ||||||| ||||| Sbjct 92585 CATCTCGATAGATGGAAAGACCAACTTCTTCGAGAAGCGTGTCTCCGAGTATCAGCGT 92528 >seq3658 Length=1447888 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | ||||||||||||| ||||||||||| | Sbjct 41014 CCTCCACGAAGACGAAGAACGAGATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCCGAC 41073 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || |||| | || | ||| |||||||| || || Sbjct 41074 AAGGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCTGGTGGG 41133 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | |||||| | | || ||| Sbjct 41134 ATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACC 41193 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || ||||| || || || || || |||||||| Sbjct 41194 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 41240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496239633962400