Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3658 93.3 4e-14 seq3649 84.2 2e-11 >seq3658 Length=1447888 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||||| || ||||| |||||||||||| || || || ||| || Sbjct 43497 ACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCGGACAAAGTACGTCCATCCTCA 43556 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || ||||||||| |||| | || |||||||| || || || || |||||||| | Sbjct 43557 AGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 43616 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | || | |||||||| || || |||| ||| | || || Sbjct 43617 ATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCAACCTCGAGGGTGATGGTCTTT 43676 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || || || ||||| Sbjct 43677 CCAGTGAGGGTCTTCACGAAGATTTGCAT 43705 >seq3649 Length=974952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/149 (73%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 47439 TACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCC--CAAGATTTACC 47496 |||||||| || |||||||| | | |||| | |||| | || | |||| | ||| Sbjct 92674 TACATCGAGTTCGTCGCCGATCACTTGCTTGCGGAGCTC--GGATGCGACAAGCTGTACA 92617 Query 47497 ACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTT 47556 | ||||||||||||| || ||| | ||||| ||| | || || ||||||||||| | Sbjct 92616 ATGTGAAGAATCCATTCGACTTCATGGAGAACATCTCGATAGATGGAAAGACCAACTTCT 92557 Query 47557 TCGAGAAGCGCGTCGGCGAATATAAACGT 47585 |||||||||| ||| ||| ||| | ||| Sbjct 92556 TCGAGAAGCGTGTCTCCGAGTATCAGCGT 92528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475478986400800