Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3658 95.1 1e-14 seq3660 82.4 7e-11 >seq3658 Length=1447888 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || | || || || || ||||| ||||| || || || Sbjct 41239 ATACCTCCACGGAGACGGAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCA 41298 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | ||| ||||| ||| | || | || ||||||||| || Sbjct 41299 GAGAGTGTACGTCCATCTTCGAGTTGCTTTCCAGCGAAGATAAGTCTTTGCTGGTCTGGT 41358 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| ||||| || || ||||| ||| | ||||||||||| ||| Sbjct 41359 GGGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTTTCAATGGTGTCGGAAGCCTCC 41418 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || || ||||| ||||| || || || |||||||| Sbjct 41419 ACCTCCAAAGTGATAGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 41468 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | | || | || || || ||||||||||||||||| |||||| Sbjct 43476 ATTCCTCCTCTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCG 43535 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | ||| ||||| ||| | || | || |||||| || || Sbjct 43536 GACAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGT 43595 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || ||||| || || |||| || | || | |||||| || | || Sbjct 43596 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTCTCAATGGTGTCCGAGGCTTC 43654 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || || || || || || || || |||||||| Sbjct 43655 AACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 43705 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || || | | || ||||| || ||||| ||||||||||| || || || Sbjct 41013 TCCTCCACGAAGACGAAGAACGAGATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCCGA 41072 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| ||| || | || ||||| ||| | ||||| ||||| ||||| || || Sbjct 41073 CAAGGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCTGGTGG 41132 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 || ||||| || ||||| || || |||| || | || | |||||| || | |||| Sbjct 41133 GATCCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCAGAGGCTTCGA 41191 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || | || || || || || || || || || || ||||| Sbjct 41192 CCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 41240 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || ||||| || || || ||||| ||||||||||| || Sbjct 42470 ATACCTCCACGGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCC 42529 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || | || ||||| ||| | || | || ||||| || || Sbjct 42530 GAGAGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGT 42589 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || ||||| || | |||||| |||| || Sbjct 42590 GGGATCCCTTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCAGAAGCTTCA 42649 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || || || || || || || || |||||||| Sbjct 42650 ACCTCGAGGGTGATGGTCTTTCCAGTGAGCGTCTTCACGAAGATTTGCAT 42699 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || ||||| || || || |||||||||||||| || || Sbjct 42698 ATACCTCCACGAAGACGGAGAACGAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCC 42757 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||| ||||| ||| | || | || ||||| || || Sbjct 42758 GACAAGGTCCGTCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCTGGT 42817 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || ||||| ||||| || || |||| || | || | ||| ||||||| || Sbjct 42818 GGGATTCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTATCGGAAGCTTC 42876 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| |||| || || || || || || || || || || ||||| Sbjct 42877 GACCTCGAGGGTAATAGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 42927 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | | || ||||| || || || ||||| |||||||| || || Sbjct 43704 ATTCCTCCTCTGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCC 43763 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | || ||||| ||| | || | || ||||| || || Sbjct 43764 GAAAGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGT 43823 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| ||||| || || ||||| || | ||||||||||| ||| Sbjct 43824 GGGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGGAAGCCTCC 43883 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||||| || || | ||||| || || |||||||| Sbjct 43884 ACCTCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCAT 43933 >seq3660 Length=1640336 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | |||| || |||||| || || ||||| ||||| || ||||| || || Sbjct 486263 CCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCC 486322 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| || | ||| ||||| | |||||||||||| |||| || || || || ||| Sbjct 486323 TTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGA 486382 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || || || |||||||| Sbjct 486383 GTCTTGACGAAGATTTGCAT 486402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451982464353200