Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_012788.1 Length=41441 Score E Sequences producing significant alignments: (Bits) Value seq2028 143 7e-30 seq1401 116 1e-21 >seq2028 Length=10780 Score = 143 bits (158), Expect = 7e-30 Identities = 423/640 (66%), Gaps = 24/640 (4%) Strand=Plus/Minus Query 2629 CGCATGGATGGACACGCCGACGTCTACAGCTTCCCGCAGCTGATCTTGCTCGGCGCCGAC 2688 ||| | || | |||| ||||| | || |||||||||| ||| |||| ||||| || Sbjct 4813 CGCCTCGAAGCACACATGGACGTGTTCACGATCCCGCAGCTCATCCTGCTGGGCGCTAAC 4754 Query 2689 GCGAAGAACT--TCCGCAACAAGGACGGTTCGATGAAGCCGGCCTGGCAGATCGCGTTGG 2746 | ||| | | || ||| ||||| ||| ||| || | ||||||||||| | | Sbjct 4753 G--AAGCAATGTTCAAGAACGCAGACGGGTCGTACAAGGCGTCTTGGCAGATCGCTCTCG 4696 Query 2747 CGCGCGTGTTCGCGCTGCCCGACGACGAGGACGAACCCGACGCGGCGCGG--GCCCGCGC 2804 ||| | | | || | ||||||||||| || | || | | || ||| | ||||| Sbjct 4695 GGCGTGCGCTGGCTATCCCCGACGACGACGATGCTCCTGCTG--GCTCGGATGGGCGCGC 4638 Query 2805 GGACGTGAAGCAATTCCCGGCGTCGAGTCCGCAGCCGCATATCGAGATGCTGGAACAGAT 2864 |||||||||||| || | ||| | ||| ||||| ||| | ||| | | | Sbjct 4637 GGACGTGAAGCACATCGCTGCGCAGTCGCCGGCACCGCACCTCGCGGCGCTCAACGCGTT 4578 Query 2865 CGCGATGATGTTCAGCGGCGAGACGTCGATTCCGGTCGAATCGCTCGGATT-CTCGAAT- 2922 |||| | | || ||| || ||| || | | || ||||||| | ||| Sbjct 4577 GGCGAAGCTCG--AGGCGCGCGAGTACGA--CCTGCCCGAT---TCGGATTTCGCGATGA 4525 Query 2923 CG-----CGCGAACCCGACGTCGGCCGACGCGTATATCGCATCGCGCGAAGACCTGATCG 2977 || |||||||||||| ||| || |||| | || || || || || |||||| Sbjct 4524 CGGACTTCGCGAACCCGACTGGGGCGGATTCGTACACGGCGTCTCGGGAGAACTTGATCG 4465 Query 2978 CCGAAGCCGAAGGCGCGACGGACGACTGGTCGCCGGCGTTCCGCCGATCCATGATCCGCG 3037 |||| || || |||||||| || |||||||| | || ||||| | || | || | Sbjct 4464 CCGAGGCGGAGGGCGCGACCGATGACTGGTCTGTGCCGATCCGCAACGCGGTGGTGCGTG 4405 Query 3038 CGCTGGCGATCAAGAACGGGCTCGACCGGA-TCCCGCCCGAGTGGAAGACGATCGACGCG 3096 | ||||| ||| ||||| ||| ||| | | |||| | || ||| | |||||||| || Sbjct 4404 CTCTGGCAATCCAGAAC-GGCGTGACGGAAGTCCCCGCTGATTGGGCGTCGATCGACACG 4346 Query 3097 AAGTTCCGGTCGCCGCTGTACTTGTCGAAGGCGGCGCAGGCCGACGCCGGCGCGAAGATG 3156 |||| || || ||| |||| |||||||||| || || || || ||||||||| | Sbjct 4345 AAGTGGCGTTCTCCGATGTATCTGTCGAAGGCCGCCGTCGCAGATGCGGGCGCGAAGCAG 4286 Query 3157 CTCGGCGCGGGCCCGGAATGGCTCAAGGAAACCGAAGTCGGGCTCGAATTGCTCGGGCTC 3216 || | || || || ||| | ||||| || ||||| | ||| ||||||| | Sbjct 4285 GTCTCGTCTGGTCCTGACTGGTTGAAGGACACTCGCGTCGGTATGGAAATGCTCGGCATG 4226 Query 3217 ACTCCGCAGCAGGTGAAACGCGCGCTGGCCGAACGCCGGC 3256 || | ||||||| | | ||||| ||||| || ||| ||| Sbjct 4225 ACACAGCAGCAGATCGATCGCGCTCTGGCGGAGCGCAGGC 4186 Score = 107 bits (118), Expect = 5e-19 Identities = 295/455 (65%), Gaps = 48/455 (11%) Strand=Plus/Minus Query 868 CAACGGGAGCCGGATCCTGTTTGGCGCGCGTGAGAACGGTTTCGGTCTGGGCTTCGCCGG 927 |||||| ||| |||| |||| ||||| |||||| ||| ||||| | ||||||| || Sbjct 6611 CAACGGCAGCGTGATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGA 6552 Query 928 CGTCGGAATCCTCGTGCTCGACGAGGCGCAGCGGCTCACCGACAAGGCCATGGACGACCT 987 |||| ||| || |||| ||||||||| || ||||| ||||| |||| ||| | Sbjct 6551 GGTCGACATCGAGGTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACAT 6492 Query 988 GATTCCGACGATGAACAC----CGTCGAGAATC-----CGTTGATCCTGCTCACTGGCAC 1038 | | | ||| |||| || | | | || || || | | ||| ||||| Sbjct 6491 GGTCGCAGCGACGAACCAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCATGGGCAC 6432 Query 1039 CCCGCCGCGGCCGACGGACTCGGGCGAAGTGTTCACGATGCTTCGGCAAGACGCGCTCGA 1098 || |||||| |||| || | ||||| | || | || || | || ||||| || Sbjct 6431 GCCCCCGCGGGCGACTGATCCTGGCGAGGAGTGGCTGGAGCGCCGCAATGATGCGCTTGA 6372 Query 1099 C------------------------GGCGAGTCCGAAGGCACGCTGTATGTCGAGTTCTC 1134 ||| ||| || | ||| |||| ||||||||||| Sbjct 6371 GATCAAGCCGATGGATCAGGTTGTGGGCCTGTCGGAGGACACAGTGTACGTCGAGTTCTC 6312 Query 1135 CGCGGACGAGGGCGCGCACCCCGACGACCGGGCGCAGC-TGCGCAAGGCGAACCCGTCGT 1193 |||||| ||| |||| |||| |||||| || || | |||| ||||| || || |||| Sbjct 6311 GGCGGACAAGGACGCGGACCCGGACGACATGGAACAACTTGCG-AAGGCCAATCCTTCGT 6253 Query 1194 ATCCGCACCGCACCAGTGAGCGCGCGATTCG-----GCGTATGCGAAAGAACCTC---AC 1245 ||| ||||||||| ||| ||| ||| ||| ||||| ||||||||| | Sbjct 6252 TTCCACACCGCACC-----CCGCTCGAGTCGGTCATGCGGATGCGGAAGAACCTCAAGAA 6198 Query 1246 CGAAGAGTCATTTCTGCGTGAGGCGTTCGGCATCT 1280 ||| || || || |||||||||| | ||||||| Sbjct 6197 CGAGGACTCGTTCAAGCGTGAGGCGATGGGCATCT 6163 >seq1401 Length=3734 Score = 116 bits (128), Expect = 1e-21 Identities = 433/666 (65%), Gaps = 46/666 (7%) Strand=Plus/Minus Query 658 CCGACAGGTCGGCAAGACGTACCTGATCGGCTGCATCGTGTTCGCCCTGGCGCTGC---- 713 ||| |||||||||||||||| | ||||| | ||| | |||||||| |||| Sbjct 1257 CCGCCAGGTCGGCAAGACGTTCACCATCGGGTCGATCATCTTCGCCCT----CTGCATCA 1202 Query 714 TCACGCCTGGGCTGACTGTCATCTGGACCGCGCACCGGACGAAGACCGCGAAGGAAACGT 773 || || ||| || ||||||||||||||||||| | ||| | || || |||| Sbjct 1201 TCTTCCCGAAGCTCACGGTCATCTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGT 1142 Query 774 TCGGCTCGATGAAGGCCATGTGCGCA-ACGCCGCTGGTGAACGCGCACGTGCGGAACGTC 832 ||| ||| || ||| | | || || | || | |||| | |||| | ||| | || Sbjct 1141 TCGAGTCGCTGCAGGGCTTC-GCCCAGAAGCGGAAGGTGGCCCCGCATATCCGGCAGATC 1083 Query 833 AGCGACGCGCGCGGCGACGAGGGAATCTATCTGCAC-AACGGGAGCCGGATCCTGTTTGG 891 || | | ||| | || ||| | || || ||||| ||||||| |||| || Sbjct 1082 CGCCGAGTGAACGGGCAGCAGCAGATC-ACCTTCAAGAACGGCTCCCGGATCATGTTCGG 1024 Query 892 CGCGCGTGAGAACGGTTTCGGTCTGGGCTTCGCCGGCGTCGGAATCCTCGTGCTCGACGA 951 || || ||| ||| ||||| | ||||||||||| |||| || | ||| ||| || Sbjct 1023 TGCCCGCGAGTCCGGCTTCGGCCGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGA 964 Query 952 GGCGCAGCGGCTCACCGACAAGGCCATGGACGACCTGATTCCGACGATGAACACCGTCGA 1011 ||||||| ||| | |||||||| | || ||| || | || | | ||| || |||| Sbjct 963 GGCGCAGATCCTCGGCAACAAGGCCCTTGAGGACATGGTGCCCGCCACCAACGCC-TCGA 905 Query 1012 -GAATCCGTTGATCCTGCTCACTGGCACCCCGCCGCGGCCGACGGACTCGGGCGAAGTGT 1070 ||| ||| | ||| | || | ||||||||||| || || ||| | ||||||| || Sbjct 904 AGAACCCGCTCATCATCCTGATGGGCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGT 845 Query 1071 TC-------------ACGATGC-TTCG---GCAAGA----CGCGCTCGACGGCGAG---T 1106 || |||| || ||| ||||| ||| || |||||| Sbjct 844 TCCGCACCCGCCGAAACGAAGCGATCGAGCTCAAGAAGCTCGCCGCCGCGGGCGAGGACA 785 Query 1107 CCGAA---GGCACGCTGTATGTCGAGTTCTCCGCGGACGAGGGCGCGCACCCCGACGACC 1163 ||||| | || ||| || ||||| || ||| ||| | ||| ||| |||||| Sbjct 784 CCGAATCGGACATGCTCTACGTCGAACTCGGCGCAGACCCCGACGCCGACCTGGACGACT 725 Query 1164 GGGCGCAGCTGCGCAAGGCGAACCCGTCGTATCCGCACCGCACCAGTGAGCG-CGCGATT 1222 ||| ||| | |||||| ||||| || || |||||||||||| ||| ||||| Sbjct 724 GGGATCAGGTCGCCAAGGCCAACCCCTCCTACCCGCACCGCACC-CCACGCGAAGCGATC 666 Query 1223 CGGCGTATGCGAAAGAACCTCAC---CGAAGAGTCATTTCTGCGTGAGGCGTTCGGCATC 1279 | || | || ||||||||| | ||| || || | | || || | |||||||| Sbjct 665 CTCCGCAACCGCAAGAACCTCGCCGACGACGACTCCTACCGCCGAGAAGGCCTCGGCATC 606 Query 1280 TGGGAC 1285 |||||| Sbjct 605 TGGGAC 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132483825937620