Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq515 141 2e-29 >seq515 Length=3970 Score = 141 bits (156), Expect = 2e-29 Identities = 249/355 (70%), Gaps = 11/355 (3%) Strand=Plus/Plus Query 8776 ATGATTGTCGTTGACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATGCGG 8835 ||| | ||| | ||||||||||||||| | ||| | |||| || || | || Sbjct 308 ATGGTCGTCATCGACTACCTGCAGCTGCTCTCGAG---CGGCAAGAAGTCCGAGAGCCG- 363 Query 8836 GCCACC--GAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACG 8893 ||| | |||||| || | || || || ||||||| | ||||||| ||||| | Sbjct 364 -CCAGCAGGAGGTCAGTGAGTTCTCCCGTGCCCTCAAACTGCTCTCGAAGGAGCTCGATG 422 Query 8894 TTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGC 8953 | ||| ||||||||||||||||||| || || | | |||| | ||| | ||||| || Sbjct 423 TGCCGGTCATCGCGCTGTCGCAGCTGAACCGTGCGTCCGAGCAGCGCGCCGACAAGATGC 482 Query 8954 CCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCT 9013 ||| ||| ||| |||||||| ||||||||| ||||||||||||||||| || | || Sbjct 483 CCGCCATCAGCGACCTGCGCGAATCGGGTGCGCTCGAGCAGGATGCCGACATGGTGATCC 542 Query 9014 TTATCTACCGCGATGAGGTCTATAACCCCGACAGCGCAGATCG-CGGTACGGCCGAAATC 9072 | | ||||||| ||| | |||| | | || ||| |||||| || Sbjct 543 TGCTGCACCGCGAGTCCAGCTACGAGAAGGACA-ATCCGCGCGCCGGCGAGGCCGACCTC 601 Query 9073 ATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGT-ACGGCTCGCATTCCAG 9126 ||| | || |||||||||||||| || | |||||||| |||| |||| |||||| Sbjct 602 ATCCTGGCCAAGCAGCGAAACGGCCCCACCGGCACCGTCACGG-TCGCGTTCCAG 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127540041403320