Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3663 122 1e-22 seq3635 82.4 9e-11 >seq3663 Length=2118579 Score = 122 bits (134), Expect = 1e-22 Identities = 295/442 (67%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || ||||| || || |||||||| | || | ||||| || | | || Sbjct 1960476 GTAGTACATTCCAGTCTTAAGGCCTTGCTTCCATCCGTAGAAGTGCATCGAAGTGA--TT 1960419 Query 115623 GGAGAGTG--TTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGT 115680 | || || |||| | ||||| | || | | ||| |||||||| ||||| | Sbjct 1960418 GCAGCGTAGCTTGGTTTAGCCATGTGAATATTGAGAGATTGAGATTGATCAATGAATGCT 1960359 Query 115681 CCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAG 115740 || ||||| || ||||| ||||| | ||||| ||||||||||||||| ||| Sbjct 1960358 CCACGATCAGCAGCCATCTCAATGATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAG 1960299 Query 115741 AGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACC 115800 || | |||||| ||| ||||||| || ||| || || || || || || ||| | Sbjct 1960298 AGCTCCTTAATGTCAGCTGGGATTTCTGGGATGTTCTGAATGGATCC-GTTG--TTGGCT 1960242 Query 115801 ATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGG 115857 |||| | | |||||| || | | ||| | || ||| | ||||| | | Sbjct 1960241 ATGAGGCGGTTCTTCATTTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATA 1960182 Query 115858 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTG 115917 || |||||| | || || || | || || | ||||||||| | ||| Sbjct 1960181 TGTGGATTGACTATCTGGAAGTCTCCAGAAAGAACACGACGAGAATAGATGTTTGAGGTG 1960122 Query 115918 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 115977 |||||||||| |||||||||| || | ||||| || || || || || ||||| || Sbjct 1960121 TATGGCTCAATCGACTCATTGTTTCCAAGAATTTGAGCAGTAGAAGCAGTTGGCATTGGA 1960062 Query 115978 GCCATGAGAAGGCTGTTGCGGA 115999 ||||| ||||| |||||||||| Sbjct 1960061 GCCATCAGAAGACTGTTGCGGA 1960040 >seq3635 Length=855266 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 127241 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAAT 127300 || ||||||||||||||||| ||||||||||||| ||| || ||||||||||||||| Sbjct 582822 ACACGCTTCTCGAAGAAGTTGGTCTTCCCATCGATCGAGATGTTTTCCATAAAATCAAAT 582881 Query 127301 GGGTTCTTTGAGT 127313 ||||| ||| || Sbjct 582882 GGGTTGATTGTGT 582894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613479055357200