Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3663 98.7 2e-15 seq3649 86.0 1e-11 >seq3663 Length=2118579 Score = 98.7 bits (108), Expect = 2e-15 Identities = 322/495 (65%), Gaps = 8/495 (2%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 |||||| || |||||||||| || || || || ||| | | | || |||||||| || Sbjct 1960524 CTTGTCGACTGTGAACTGAACAGCATTGACAGCTGGCTTCGTGCGCAAGTAGTACATTCC 1960465 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG-- 203956 ||||| ||||| | || ||| ||||| | |||||| |||| | |||| ||| | Sbjct 1960464 AGTCTTAAGGCCTTGCTTCCATCCGTAGAAGTGCATCGAAGTGA--TTGCAG-CGTAGCT 1960408 Query 203957 -GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGC 204015 || | ||||||||||| || ||||| || ||| || ||||| | | ||||| || Sbjct 1960407 TGGTTTAGCCATGTGAATATTGAGAGATTGAGATTGATCAATGAATGCTCCACGATCAGC 1960348 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 ||||| | || || ||| || || || |||||||| || | | || | | Sbjct 1960347 AGCCATCTCAATGATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAGAGCTCCTTAAT 1960288 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 || || | || | | || ||| || || ||||||| ||| || || | || Sbjct 1960287 GTCAGCTGGGATTTC-TGGGATGTTCTGAATGGATCCGTTGTTGGCTATGAGGCGGTTCT 1960229 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || | || || ||||| || | | || ||| | || || || |||| | Sbjct 1960228 TCATTTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATATGTGGATTGACTA 1960169 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 |||| |||||||| || || || | || | | | ||| |||| |||| || | || Sbjct 1960168 TCTGGAAGTCTCCAGAAAGAACACGACGAGAATAGATGTTTGAGGTGTATGGCTCAATCG 1960109 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 ||| ||||| || | ||| ||||| || || || ||||| ||||||| || || Sbjct 1960108 ACTCATTGTTTCCAAGAATTTGAGCAGTAGAAGCAGTTGGCATTGGAGCCATCAGAAGAC 1960049 Query 204315 AGTTGCGCACACCGT 204329 |||||| | |||| Sbjct 1960048 TGTTGCGGATTCCGT 1960034 >seq3649 Length=974952 Score = 86.0 bits (94), Expect = 1e-11 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 159641 GACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCG 159700 || ||| ||||||||| ||||||||||| || || || || || |||||||| || Sbjct 92541 GAGACACGCTTCTCGAAGAAGTTGGTCTTTCCATCTATCGAGATGTTCTCCATGAAGTCG 92600 Query 159701 AATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCC 159760 ||||| |||||||| | || |||| ||||||| |||| ||||| || || Sbjct 92601 AATGGATTCTTCACATTGTACAGCTTGTCGCATCCGAGCTCCGCAAGCAAGTGATCGGCG 92660 Query 159761 ACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGC 159820 || || |||||||| | ||||| | |||||| || || | || || || || Sbjct 92661 ACGAACTCGATGTATTGAGACATCAGACGACAGTTCATGCCAATCATGTCGACTGGAAGT 92720 Query 159821 GCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT 159880 || || | || ||||||| ||| || ||| || || | | ||||| ||| ||| Sbjct 92721 GCCTCTGTCAAGAACTCCTGCTCGATGCAGACGGCGTCCTTGATAATCTCGAAGATACGC 92780 Query 159881 TC 159882 || Sbjct 92781 TC 92782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795118722255200