Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3658 138 3e-27 seq3618 118 2e-21 >seq3658 Length=1447888 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || ||||||||||| |||| ||||||||| | ||| || | ||||||| Sbjct 41759 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAAGGTGCGTCCATCT 41818 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || |||||||| ||||||||||| | |||||| || || ||||||||| || Sbjct 41819 TCGAGTTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCT 41878 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| ||| | |||||| | | ||| || || | ||||| ||| Sbjct 41879 TGAATCTTAGCCTTCACATTTTCAATGGTGTCAGAGGCTTCGACCTCAAGAGTGATGGTC 41938 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 41939 TTTCCGGTGAGGGTCTTGACGAAGATCTG 41967 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || || ||||| ||||||||||||| ||||||||| | ||| ||| Sbjct 41020 CGAAGACGAAGAACGAGATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCCGACAAGGTC 41079 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || ||||||||||||||||| || | ||| || ||||| || || ||| Sbjct 41080 CGTCCATCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCTGGTGGGATCCCT 41139 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| |||| |||||| | | ||| || || | Sbjct 41140 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGG 41199 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || || || Sbjct 41200 GTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTG 41237 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| |||||||| |||| ||||||||||| | || | ||||||| Sbjct 41257 AGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGTCCATCT 41316 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || |||||||| |||||||| || | |||||||| || ||||| ||| || Sbjct 41317 TCGAGTTGCTTTCCAGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTCT 41376 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || ||| | |||||| | | || || ||||| ||||| ||| Sbjct 41377 TGGATCTTGGCTTTGACATTTTCAATGGTGTCGGAAGCCTCCACCTCCAAAGTGATAGTC 41436 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || || ||||| Sbjct 41437 TTTCCGGTGAGAGTCTTGACGAAGATTTG 41465 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || || |||||||||| ||||| || | |||||| | |||||| Sbjct 43494 AGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCGGACAAAGTACGTCCATCC 43553 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || |||||||| ||||||||||| | ||||| || || ||||||||| || Sbjct 43554 TCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCT 43613 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | ||| || || | ||||| ||| Sbjct 43614 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCAACCTCGAGGGTGATGGTC 43673 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || ||||| Sbjct 43674 TTTCCAGTGAGGGTCTTCACGAAGATTTG 43702 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || || ||||| ||||||||||||| |||||||| | ||| ||| Sbjct 42707 CGAAGACGGAGAACGAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCCGACAAGGTC 42766 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || |||||||||||||| ||||| | |||||| || || ||||| Sbjct 42767 CGTCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCTGGTGGGATTCCC 42826 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| ||| ||| |||| ||| || | | ||| || || | Sbjct 42827 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACCTCGAGG 42886 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || || || || Sbjct 42887 GTAATAGTCTTTCCAGTGAGGGTCTTGACGAAGATCTG 42924 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||| |||||||| |||| |||||||| | | ||| ||||| ||| Sbjct 43722 AGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGAAAGAGTTCTTCCGTCT 43781 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||||||||| | |||||| || || ||||| ||| || Sbjct 43782 TCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCTTTGTCT 43841 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || || | |||||| | | || || ||||| ||||| || Sbjct 43842 TGGATCTTGGCTTTGACATTCTCAATGGTGTCGGAAGCCTCCACCTCCAAGGTGATGGTT 43901 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | |||||||| || ||||| Sbjct 43902 TTTCCAGTCAACGTTTTCACGAAGATTTG 43930 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||| |||||||| |||| || ||||| | | ||| ||||| ||| Sbjct 42488 AGAACGAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGAGAGAGTTCTTCCGTCT 42547 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||||||||| | |||||| || || || ||||| || Sbjct 42548 TCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCT 42607 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || || | |||||| | | ||| || || | ||||| ||| Sbjct 42608 TGGATCTTGGCTTTGACATTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATGGTC 42667 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || ||||| Sbjct 42668 TTTCCAGTGAGCGTCTTCACGAAGATTTG 42696 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| |||||||||||| |||||||| | ||||||||| | || | | || |||||| Sbjct 41347 AAAGACTTATCTTCGCTGGAAAGCAACTCGAAGATGGACGTACACTCTCTGACTACAACA 41288 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTT 201018 ||||||| ||||||||||||||| | ||| Sbjct 41287 TCCAGAAGGAGTCTACTCTTCACTTGGTT 41259 >seq3618 Length=512689 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||||| | ||||| || |||||||| |||| ||||||||| | | ||| Sbjct 495173 CGGAGTCGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTA 495114 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || |||||||| ||||||||||| | ||||| || | |||||| Sbjct 495113 CGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCT 495054 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| |||| ||||| | | ||| || || | Sbjct 495053 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGG 494994 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || ||||| || ||||| Sbjct 494993 GTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATTTG 494956 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||||| | ||||| || |||||||| |||| ||||||||| | | ||| Sbjct 509357 CGGAGTCGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTA 509298 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || |||||| | ||||||||||| | ||||| || | |||||| Sbjct 509297 CGTCCATCCTCAAGTTGCTTTTCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCT 509238 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| |||| ||||| | | ||| || || | Sbjct 509237 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGG 509178 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || ||||| || ||||| Sbjct 509177 GTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATTTG 509140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178866164895890