Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3658 125 8e-24 seq3618 96.9 4e-15 >seq3658 Length=1447888 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | || ||||| | || |||||| |||||||||||||| || Sbjct 43707 CCTCCTCTGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGAA 43766 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | |||| || |||||||| |||||||| || | | |||||| || | || Sbjct 43767 AGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGG 43826 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| ||||| |||||| |||| || | | |||||| | ||||| Sbjct 43827 ATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGGAAGCCTCCACC 43886 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||||| || |||| |||||| || ||||||||||| Sbjct 43887 TCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCAT 43933 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| || | || || | || ||||||||||| |||||||| Sbjct 41049 CTCCTTTTGGATGTTGTAGTCCGACAAGGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAA 41108 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || || ||||| | || | | |||||||| |||||| ||||| | Sbjct 41109 AATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 41168 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || || | |||||||| || || || || || || || Sbjct 41169 CTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGAC 41228 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 41229 GAAGATCTGCAT 41240 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | |||| || | |||| ||||||||||||||||| ||||| Sbjct 43479 CCTCCTCTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCGGAC 43538 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| || | || || || ||||| || ||||| || | | ||||| || | || Sbjct 43539 AAAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGTGGA 43598 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| |||||| ||||| || | | ||||| | ||| || Sbjct 43599 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCAACC 43658 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||| || || || || || || || |||||||||||| Sbjct 43659 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCATT 43706 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||| ||||| || ||||| | |||| || |||||||| |||||||| Sbjct 42508 CTCCTTCTGGATATTATAGTCCGAGAGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAA 42567 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||| || | || | | |||||||| |||||| |||| | Sbjct 42568 GATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCTTTGACATT 42627 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || || | |||||||| || || || ||||| || || Sbjct 42628 CTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGCGTCTTCAC 42687 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 42688 GAAGATTTGCAT 42699 Score = 82.4 bits (90), Expect = 9e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || | || ||||| ||||| || ||||| Sbjct 41277 CTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGTCCATCTTCGAGTTGCTTTCCAGCGAA 41336 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||||| | || | | ||| ||||| |||||| |||| | Sbjct 41337 GATAAGTCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATT 41396 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| | ||||| |||| ||||| || || || || || || || || Sbjct 41397 TTCAATGGTGTCGGAAGCCTCCACCTCCAAAGTGATAGTCTTTCCGGTGAGAGTCTTGAC 41456 Query 46582 AAAGATTTGCATT 46594 |||||||||||| Sbjct 41457 GAAGATTTGCATT 41469 Score = 82.4 bits (90), Expect = 9e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||||||||| || | || || | || ||||| ||||| |||||||| Sbjct 42736 CTCCTTTTGGATATTGTAGTCCGACAAGGTCCGTCCATCCTCGAGTTGCTTTCCGGCGAA 42795 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||| || | || | | ||| ||||| |||||| ||||| | Sbjct 42796 AATGAGTCTCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTT 42855 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | ||| || || | || || || || || || || || || || Sbjct 42856 CTCGATGGTATCGGAAGCTTCGACCTCGAGGGTAATAGTCTTTCCAGTGAGGGTCTTGAC 42915 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 42916 GAAGATCTGCATT 42928 >seq3618 Length=512689 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || | || || || ||||| || ||||| Sbjct 495144 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAA 495085 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||| || || || | | |||||||| |||||| ||||| | Sbjct 495084 GATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 495025 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| | ||| || || | |||||||| || || || || || || || Sbjct 495024 CTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCAC 494965 Query 46582 AAAGATTTGCATT 46594 |||||||||||| Sbjct 494964 GAAGATTTGCATT 494952 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || | || || || ||||| | ||||| Sbjct 509328 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCAAGTTGCTTTTCAGCGAA 509269 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||| || || || | | |||||||| |||||| ||||| | Sbjct 509268 GATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 509209 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| | ||| || || | |||||||| || || || || || || || Sbjct 509208 CTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCAC 509149 Query 46582 AAAGATTTGCATT 46594 |||||||||||| Sbjct 509148 GAAGATTTGCATT 509136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565212469688400