Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3649 143 3e-29 seq3658 122 9e-23 seq3618 114 1e-20 >seq3649 Length=974952 Score = 143 bits (158), Expect = 3e-29 Identities = 247/357 (69%), Gaps = 4/357 (1%) Strand=Plus/Minus Query 132924 CCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCA 132983 ||| || ||||| || ||| | ||||| || |||||||| || || || |||||||| Sbjct 67612 CCTTGAGATGAGCTCATTGGAGTGTGTCAATCCTGGCATGAGTCCTCGCTTCTTGAGCCA 67553 Query 132984 AAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAG 133043 || || | |||||| || ||||||| || ||||| || ||||| || | || Sbjct 67552 GAAGATTGAGGCGAACGATCCACTGAAGAAGATTCCTTCGACAGCGGCGAAGGCGATGAG 67493 Query 133044 GCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTC 133103 || ||| |||||| || | ||| | |||||| || ||||| |||||||| | Sbjct 67492 ACGTTCGGCGAACGACGCCTTCTTGTCCGAGATCCACTTCATAGCCCAGTCGGCCTTCTT 67433 Query 133104 TTTGACGCA--CGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAA 133161 |||| | | || ||| |||||||| |||| | || ||| | | | Sbjct 67432 CTTGATGAATTCGAACTCGAAA--ATGGCGTTGAACAGAGTAAGGCGCTCCTTCTCATCA 67375 Query 133162 CGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATT 133221 || | |||||| |||||||| |||| ||||| |||||||| | |||||| ||||||||| Sbjct 67374 CGAATGTAGGTTTCGATGAGCTTCGAGTACATCTCCGAGTGAATGTTCTCGATGGCGATT 67315 Query 133222 TGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCG 133278 || || ||||| ||| | || ||||| ||||| ||||| | | ||| |||||| Sbjct 67314 TGGAATCCGTAGAAGAATCGAGCCTCCGACACCTTGACTTCGTTTGAGAAGCGCTCG 67258 >seq3658 Length=1447888 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| |||||| | || || |||||||||||| | || || ||||| || Sbjct 43933 ATGCAAATCTTCGTGAAAACGTTGACTGGAAAAACCATCACCTTGGAGGTGGAGGCTTCC 43874 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| |||||||||||||| || | || || Sbjct 43873 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAG 43814 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | ||||| | ||| || || ||||| || |||| | || || |||||||| Sbjct 43813 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAAGACGGAAGAACTCTTTCGGACTACAAT 43754 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || ||| | || || ||| | ||||| || Sbjct 43753 ATCCAGAAGGAGTCCACTCTTCATCTCGTTCTCCGTCTCAGAGGAGG 43707 Score = 113 bits (124), Expect = 5e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || ||||| || || || ||||| | || || ||||| | Sbjct 41469 AATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACTATCACTTTGGAGGTGGAGGCTTC 41410 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | ||| | |||| || |||| |||||||||||||| || | ||||| Sbjct 41409 CGACACCATTGAAAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGACCA 41350 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | || || | ||| || || || || || || | || || ||| |||||||| Sbjct 41349 GCAAAGACTTATCTTCGCTGGAAAGCAACTCGAAGATGGACGTACACTCTCTGACTACAA 41290 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || || ||||| || ||| Sbjct 41289 CATCCAGAAGGAGTCTACTCTTCACTTGGTTCTCCGT 41253 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || ||||| || || ||||||||| |||| || || ||| | Sbjct 43706 AATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCCTC 43647 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| ||||| || |||||||| | || | Sbjct 43646 GGACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATC 43588 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || | ||||| | ||| || || || || || || | || || | ||| |||| Sbjct 43587 AGCAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTTTGTCCGATTACA 43528 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | |||||||||||| | || || || ||||| || ||| | ||||| || Sbjct 43527 ATATCCAAAAGGAATCTACACTCCACTTGGTTCTCCGTCTCAGAGGAGG 43479 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||||||| |||| ||||| ||| | Sbjct 41240 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 41181 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || || || | ||||| Sbjct 41180 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCA 41122 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| ||| || || ||||| || || | || ||| | |||||||| Sbjct 41121 ACAACGTTTGATTTTCGCCGGAAAGCAGCTCGAGGATGGACGGACCTTGTCGGACTACAA 41062 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || ||| | || || ||| Sbjct 41061 CATCCAAAAGGAGTCAACTCTTCATCTCGTTCTTCGT 41025 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || |||||||| | || ||||| ||| | Sbjct 41970 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTCGAAGCCTCT 41911 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || || | ||||| || |||||||| | || || Sbjct 41910 GACACCATTGAAAATGTGAAGGCTAAGATTCAAGACAAGGAAGGAATTCCACCAGATCAG 41851 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | ||||| | ||| || || || || || || | |||||| | ||||||||| Sbjct 41850 CAGAGACTCATCTTCGCTGGAAAGCAACTCGAAGATGGACGCACCTTGTCGGACTACAAC 41791 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| |||| || ||| | || || ||| | ||||| || Sbjct 41790 ATCCAGAAGGAGTCGACCCTTCATCTCGTTCTCCGTCTCAGAGGTGG 41744 Score = 102 bits (112), Expect = 8e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || || || ||| |||| ||||| || | Sbjct 42928 AATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACTATTACCCTCGAGGTCGAAGCTTC 42869 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||| | | | | |||| | || | || |||| |||||||||||||| || | || | Sbjct 42868 CGATACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATC 42810 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| | ||||||| ||| || || || || || || | || ||| | ||||||| Sbjct 42809 AGCAGAGACTCATTTTCGCCGGAAAGCAACTCGAGGATGGACGGACCTTGTCGGACTACA 42750 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | ||||||||||| | || || ||| | || || ||| Sbjct 42749 ATATCCAAAAGGAGTCCACTCTTCATCTCGTTCTCCGT 42712 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||||||| |||| || || || | Sbjct 42471 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCTTCT 42412 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || ||||| || | || || Sbjct 42411 GACACCATTGAGAACG-TGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGATCA 42353 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | ||||| | || || || || || || || | || || || ||||||||| Sbjct 42352 GCAAAGACTCATCTTTGCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAA 42293 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || || | || || |||||||| || || Sbjct 42292 CATCCAGAAAGAGTCCACCCTCCATTTGGTCCTCCG 42257 >seq3618 Length=512689 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || ||||| || || ||||||||| |||| ||||| || | Sbjct 494952 AATGCAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTC 495011 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | |||| | || | || |||| ||||| || ||||| || || || | Sbjct 495012 CGACACTATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATC 495070 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || | ||||| | ||| || || || || || || | || || || |||||||| Sbjct 495071 AGCAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACA 495130 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| | || || |||||||| || || Sbjct 495131 ACATCCAGAAGGAGTCCACCCTCCATTTGGTCCTCCG 495167 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || ||||| || || ||||||||| |||| ||||| || | Sbjct 509136 AATGCAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTC 509195 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | |||| | || | || |||| ||||| || ||||| || || || | Sbjct 509196 CGACACTATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATC 509254 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || | ||||| | ||| | || || || || || | || || || |||||||| Sbjct 509255 AGCAAAGACTCATCTTCGCTGAAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACA 509314 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| | || || |||||||| || || Sbjct 509315 ACATCCAGAAGGAGTCCACCCTCCATTTGGTCCTCCG 509351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500149854572800