Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_014458.1 Length=59598 Score E Sequences producing significant alignments: (Bits) Value seq1401 132 2e-26 seq2028 116 1e-21 >seq1401 Length=3734 Score = 132 bits (146), Expect = 2e-26 Identities = 349/516 (68%), Gaps = 30/516 (6%) Strand=Plus/Minus Query 1700 CGACCAATGGCAGGACGACCTCGGAAAGCTGGTATGC--GCCAAGCGATCCGACGGCCTG 1757 |||| ||||||||| | |||||| || | |||| |||||||| || ||| ||| Sbjct 1353 CGACGAATGGCAGGCAGGCCTCGGGC-GCGCG-ATGCTCGCCAAGCGCGCCAGCGGACTG 1296 Query 1758 TACGCGGCCGACATGTTCGCCATG------TCGATTCCGCGGCAGACAGGCAAGACCTAT 1811 ||||| |||| ||| || ||| ||||| || ||| |||||||| | Sbjct 1295 TACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTGCCGCCAGGTCGGCAAGACGTTC 1236 Query 1812 TTTCTCGGCGCGATCGTGTTCGCGTTCTGCAAGATGAATCCCG--GCACAACGGTCATCT 1869 |||| ||||| | ||||| |||||| || ||||| || || ||||||||| Sbjct 1235 ACCATCGGGTCGATCATCTTCGCCCTCTGCATCATCT-TCCCGAAGCTCA-CGGTCATCT 1178 Query 1870 GGACAGCGCACCGGACACGCACCGCAGCTGAGACGTTCAAGAGTATGCAGGCGCTCGCC- 1928 |||| ||||||| | |||||| | ||||||||| || |||||| ||||| Sbjct 1177 GGACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAGTCGCTGCAGGGCTTCGCCC 1118 Query 1929 --AAGCGTGAGCAGATCGCCCCGCACATCTTGAACGTGCACACGGGCAACGGCAAAGAGG 1986 ||||| | || | |||||||| ||| | | | | | | ||||| | || Sbjct 1117 AGAAGCG---GAAGGTGGCCCCGCATATCCGGCAGATCCGCCGAGTGAACGGGCAGCAG- 1062 Query 1987 CCGTTCTG-TTCACCAACGGCAGTCGAATCCTGTTCGGCGCACGCGAGAAAGGGTTCGGC 2045 | | || |||| |||||| || ||| ||||||| || |||||| || |||||| Sbjct 1061 CAGATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGC 1002 Query 2046 CGTGGTTTCGCCAAGGTCGACGTCCTGATCTTCGACGAGGCGCAGATTCTCAGCGAAAAC 2105 || || |||||| ||||||||| || | ||| ||||||||||| ||| || | || Sbjct 1001 CGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAG 942 Query 2106 GCGATGGACGACATGATCCCGGCGACCAACGCATCGCCTAA--CGGTC-TGATCCTGTTC 2162 || | || |||||| | || || |||||||| ||| || || || | |||||| | Sbjct 941 GCCCTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTCATCATCCTGAT- 883 Query 2163 GCGGGCACGCCGCCGAAGCCCA-CCGATCCCGGCGA 2197 |||||| ||||| ||||| ||| |||||||| Sbjct 882 --GGGCACCCCGCC-CCGCCCAGTCGACCCCGGCGA 850 >seq2028 Length=10780 Score = 116 bits (128), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 9/215 (4%) Strand=Plus/Minus Query 1994 GTTCACCAACGGCAGTCGAATCCTGTTCGGCGCACGCGAGAAAGGGTTCGGCCGTGGTTT 2053 |||| ||||||||| ||| |||||||||| || ||| |||||||| ||||| || Sbjct 6617 GTTCCGCAACGGCAGCGTGATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTT 6558 Query 2054 CGCCAAGGTCGACGTCCTGATCTTCGACGAGGCGCAGATTCTCAGCGAAAACGCGATGGA 2113 || | |||||||| || | ||||||| ||||||||||| || | ||| || ||| |||| Sbjct 6557 CGACGAGGTCGACATCGAGGTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGA 6498 Query 2114 CGACATGATCCCGGCGACCAAC--GCATCGCCTAA-------CGGTCTGATCCTGTTCGC 2164 |||||| || | ||||| ||| | ||| | || || ||| | | ||| Sbjct 6497 AGACATGGTCGCAGCGACGAACCAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCAT 6438 Query 2165 GGGCACGCCGCCGAAGCCCACCGATCCCGGCGAGG 2199 ||||||||| ||| | | || ||||| ||||||| Sbjct 6437 GGGCACGCCCCCGCGGGCGACTGATCCTGGCGAGG 6403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190583693762400