Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_014459.1 Length=59798 Score E Sequences producing significant alignments: (Bits) Value seq1401 145 3e-30 >seq1401 Length=3734 Score = 145 bits (160), Expect = 3e-30 Identities = 351/518 (68%), Gaps = 20/518 (4%) Strand=Plus/Minus Query 1686 CGACCAATGGCAGGACGACCTCGGAAAGCTGGTATGC--GCCAAGCGATCCGACGGCCTG 1743 |||| ||||||||| | |||||| || | |||| |||||||| || ||| ||| Sbjct 1353 CGACGAATGGCAGGCAGGCCTCGGGC-GCGCG-ATGCTCGCCAAGCGCGCCAGCGGACTG 1296 Query 1744 TACGCCGCCGACATGTTCG----CA--ATGTCGATCCCGAGGCAGACAGGCAAGACCTAC 1797 |||||||||| ||| || || || |||||| | ||| |||||||| | | Sbjct 1295 TACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTGCCGCCAGGTCGGCAAGACGTTC 1236 Query 1798 TTTCTCGGCGCGATCGTGTTCGCGCTCTGCAAGATGACTCCCGGTACA-ACGGTCATCTG 1856 |||| ||||| | ||||| ||||||| || ||||| | ||||||||||| Sbjct 1235 ACCATCGGGTCGATCATCTTCGCCCTCTGCATCATCT-TCCCGAAGCTCACGGTCATCTG 1177 Query 1857 GACGGCGCACCGGACACGTACGGCGGCTGAGACGTTCAAGAGTATGCAGGCGCTCGCCAA 1916 ||| ||||||| | || || | ||||||||| || |||||| ||||| | Sbjct 1176 GACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAGTCGCTGCAGGGCTTCGCCCA 1117 Query 1917 GC-GCGAGCAGATCGCCCCGCACATCTTGAACGTGCACACCGGCAACGGCAAAGAGGCCG 1975 | ||| | || | |||||||| ||| | | | | | | ||||| | || Sbjct 1116 GAAGCG-GAAGGTGGCCCCGCATATCCGGCAGATCCGCCGAGTGAACGGGCAGCAGCAGA 1058 Query 1976 TGTTGTTCACCAACGGCAGCCGAATCCTGTTCGGCGCCCGTGAGAAAGGGTTCGGCCGCG 2035 | |||| |||||| ||| ||| ||||||| ||||| ||| || |||||||||| Sbjct 1057 TCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCCGCG 998 Query 2036 GTTTCGCCAAGGTCGACGTTCTGATTTTCGACGAGGCTCAGATCCTCAGCGAAAACGCAA 2095 | |||||| |||||||| || | ||| ||||| ||||||||| || | || || Sbjct 997 GCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAGGCCC 938 Query 2096 TGGACGACATGGTTCCGGCGACCAACGCCTCACCTAAC--GGTC-TGATCCTGTTCGCGG 2152 | || |||||||| || || ||||||||||| ||| | || | |||||| | || Sbjct 937 TTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTCATCATCCTGAT---GG 881 Query 2153 GCACCCCGCCGAAGCCGACAGACCCCGGCGAGGTGTTC 2190 |||||||||| || ||||||||||| | |||| Sbjct 880 GCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGTTC 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191223665870400