Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3630 389 3e-102 seq3658 250 2e-60 seq3663 178 1e-38 seq3636 131 1e-24 seq2032 123 2e-22 seq3669 122 7e-22 seq3667 100 2e-15 seq3545 93.3 3e-13 seq3470 91.5 1e-12 >seq3630 Length=571110 Score = 389 bits (430), Expect = 3e-102 Identities = 1024/1553 (66%), Gaps = 90/1553 (6%) Strand=Plus/Minus Query 517141 ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAA 517200 |||| ||| || |||| ||| ||||| | | |||||| ||||| | | ||| || || Sbjct 458738 ATCTTCTTTCTCGAATTGTTTCGCTTCGTTTACCATTCTATCAATATCAGCTTGCGATAA 458679 Query 517201 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGC 517260 || ||| | ||| ||| || || || | ||| ||||||||||| | || Sbjct 458678 TCGTCCTTTCTCATTTCGAATTGTGATTCGATTCGTTTTTCCAGTTGATTTATCCTCAGC 458619 Query 517261 AGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCC 517320 | |||||| | || ||||| ||||| | |||||| ||||||||||||||||| || || Sbjct 458618 CGACACATTCAATATTCCATTTGCATCGATATCAAAAGTGACTTCAATTTGAGGAACACC 458559 Query 517321 TCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 517380 | ||||||| || || || | | |||||||| ||| | |||||| ||| Sbjct 458558 ACGTGGAGCAGGAGGAATTCCAGAAAGTTCGAATGTTCCGAGACGGTGATTATCACGAGT 458499 Query 517381 GAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGT 517440 | ||||| || ||| ||| |||||| | |||| | | ||||||||| | ||| || Sbjct 458498 CATGGCACGTTCTCCTTCGTAAACTTGGATTGAAACTCCTGGTTGATTATCAGCATATGT 458439 Query 517441 TGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCAT 517500 ||| ||| | | || ||| |||||| ||||||| |||||| | |||||||| Sbjct 458438 TGTGAATGTTTTCGACGCTTTCGTTGGAATTCGAGTGTTTCGATCAATTAAGTTGGTCAT 458379 Query 517501 AATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATT 517560 | |||||| ||||| || | |||||| | |||| |||||||| || | | || Sbjct 458378 CACACCACCAGCTGTCTCAATTCCAAGACTCAATGGAGCAACATCAACCAGTAATACATC 458319 Query 517561 TTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGC 517620 || || | ||| ||| | ||| ||| | ||||||||||| ||||| ||| |||| Sbjct 458318 TTTAATTGTTTGATCCTTCACTCCAGAAAGTACAGCTGCTTGAACTGCAGCTCCAAATGC 458259 Query 517621 AACAGCTTCATCAGGATT-----AACAGT----TTC------------------------ 517647 ||| ||||| || ||||| |||| | ||| Sbjct 458258 AACTGCTTCGTCTGGATTGATTGAACAATTCAATTCCTGAAAAACAAAAAATTAGAATAA 458199 Query 517648 ------ATTTAGTT-------------TT---TTACCATTGAAAAAATTTGAAAGAAGTT 517685 ||| |||| || || ||||||||||| | | || | | Sbjct 458198 AATGAAATTGAGTTGAGATAATAACACTTACCTTTCCATTGAAAAAGTCTTTGAGCA-TC 458140 Query 517686 GTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744 ||| | | | |||| ||||| |||||| ||||| || || | ||||| | || ||| Sbjct 458139 TTCTGAATTTTCGGAACACGAGTTGATCCACCAACCAAAACGACTTCATCAATCTTCGAT 458080 Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804 || || ||||| | ||| | | |||| ||||| ||||||||| | | || | Sbjct 458079 TTGTCGAGTTTCGCATCTCGAAGAGCTTTCTCAACCGGTTCAAGAGTCTTACGGAATAGA 458020 Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA-----GAGTGACATTATAATCAATTC 517859 || | ||| | ||| || ||| ||| | ||| | ||| ||| |||| |||| Sbjct 458019 TCAGCACACAATTCCTCAAATCGAGCACGAGTTATTTTCGAG-CACA----AATCGATTC 457965 Query 517860 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAG 517919 ||||||| | ||||||||||| || || | || | ||| || |||| | ||| | Sbjct 457964 CTTCGAAAAGTGAATCAACTTCGATTGTGGCTTCGGATGAACTCGAAAGTGTCCTTTTGG 457905 Query 517920 CACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTT 517979 | ||||||||||| || | || | ||| | ||| || |||| | |||| | ||| Sbjct 457904 CTCGTTCACATGCAGTTCGAAGACGTCGAATGGCACGTG--GATTCGGTGAAATATCTTT 457847 Query 517980 --TATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCT 518035 | ||||||||||| || | || | |||| | | | | ||| |||||| Sbjct 457846 GCCAGTCTTTCTCTTGAATTCAT--TCATAAAGTGTTGAAGCATTCTCTGATCGAAATCT 457789 Query 518036 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 518095 || ||||| | | ||||| || | || | | | |||| ||| | | ||||| | Sbjct 457788 TCTCCTCCAAGATGAGTATCACCAGCTGTTGATTTCACTTCGAATATTGATCCTTCAGAA 457729 Query 518096 GACAAAAGAGTT---ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 518152 ||||| || |||||| || || || || | ||| || || | ||||||| | Sbjct 457728 ATGGAAAGAATTGAAACATCAAAAGTACCTCCTCCAAGATCGAATATCAATACATTCTTC 457669 Query 518153 TCTTTGTCTTGGT-TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAAT 518211 |||| | ||| | |||||| | ||||| |||| |||||| |||||||||||||| || Sbjct 457668 TCTTCG-CTTATTCCTTTATCCAATCCATAAGCAAGAGCAGCTGCAGTTGGTTCATTGAT 457610 Query 518212 AATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGA 518271 |||| | |||| | ||||||||| || |||||||||| || |||||||| || Sbjct 457609 TATTCGAATTGCATTCAATCCAGCAATTGTTGCTGCATCTTTTGTTGCTTGTCTCTGACT 457550 Query 518272 ATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGC 518331 || || ||||||||||| |||||||| || ||||| ||| | | |||| ||| | Sbjct 457549 GTCATTGAAATATGCAGGTACAGTAATCACTGCATCTTTTATCGCATGTCCAACATATGT 457490 Query 518332 GCTTGCCGTTTGTTTCATTTTACTTAA-AATCATTGATGAAATTTGTTCTGGGGAATATT 518390 ||||||| ||||| || || || | ||||| ||| |||| |||||| ||| Sbjct 457489 TTCCGCCGTTTCCTTCATCTT-CTGAAGTACCATTGCTGAGATTTCTTCTGGATTGAATT 457431 Query 518391 GC--TTGGATTCATTTTGATATGATACTTCAAAATATGGTTT--ATTACCAACATTAATA 518446 || || || ||| || | | ||||||| |||||| || | || | Sbjct 457430 GCCGTTTCTCTC-CTTTCATTTCA-ACTTCAATCACTGGTTTCCCTTGTTTTCCTT--TT 457375 Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506 ||| ||||||||| | ||| ||||||||||| || |||| ||| ||| ||| Sbjct 457374 ACTCCAAATGGCCAATGTTTGCAGTCTGATTGAACTGTTGACTCATCGAAACGTCTTCCA 457315 Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCT 518566 || |||||||||||||| || | ||| || ||||||| || ||||||| ||| ||| Sbjct 457314 ATCAATCGTTTTGCATCGAATACAGTGTTCTCTGGATTACGAGCTGCTTGATCTTTTGCT 457255 Query 518567 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGT 518619 |||||||||| || ||||||| || || |||| ||||||||||| ||||| Sbjct 457254 GCATCTCCAACCAATCGTTCTGTATCAGTGAATGCGACATATGATGGTGTTGT 457202 Score = 192 bits (212), Expect = 4e-43 Identities = 309/436 (71%), Gaps = 10/436 (2%) Strand=Plus/Plus Query 518189 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 518248 ||||| |||||||||||||| || |||| | |||| ||||||||| || ||||| Sbjct 455857 GCAGCTGCAGTTGGTTCATTGATTATTCGAATTGCATTCCATCCAGCAATTGTTGCTGCA 455916 Query 518249 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCA 518308 ||||| || |||||||| || || || ||||||||||| |||||||| || ||||| Sbjct 455917 TCTTTTGTTGCTTGTCTCTGACTGTCATTGAAATATGCAGGTACAGTAATCACTGCATCT 455976 Query 518309 GTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAA-ATCATTGA 518367 ||| | | |||| ||| | ||||||| ||||| || || || | ||||| Sbjct 455977 TTTATCGCATGTCCAACATATGTTTCCGCCGTTTCCTTCATCTT-CTGAAGTACCATTGC 456035 Query 518368 TGAAATTTGTTCTGGGGAATATTGC--TTGGATTCATTTTGATATGATACTTCAAAATAT 518425 ||| |||| |||||| ||||| || || ||| || | | ||||||| | Sbjct 456036 TGAGATTTCTTCTGGATTGAATTGCCGTTTCTCTCCTTTC-ATTTCA-ACTTCAATCACT 456093 Query 518426 GGTTTA--TTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACAC 518483 ||||| || | || | ||| ||||||||| | ||| ||||||||||| Sbjct 456094 GGTTTCCCTTGTTTTCCTT--TTACTCCAAATGGCCAATGTTTGCAGTCTGATTGAACTG 456151 Query 518484 TTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGAT 518543 || |||| ||| ||| ||||| |||||||||||||| || | ||| || ||||| Sbjct 456152 TTGACTCATCGAAACGTCTTCCAATCAATCGTTTTGCATCGAATACAGTGTTCTCTGGAT 456211 Query 518544 TAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAA 518603 || || ||||||| ||| || |||||||||| || ||||||| || || |||| || Sbjct 456212 TACGAGCTGCTTGATCTTTTGCCGCATCTCCAACCAATCGTTCTGTATCAGTGAATGCAA 456271 Query 518604 CATATGATGGAGTTGT 518619 |||||||||| ||||| Sbjct 456272 CATATGATGGTGTTGT 456287 Score = 111 bits (122), Expect = 1e-18 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 322241 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 322300 || || || |||||||| ||||||||||||||||| |||||| || ||| || || Sbjct 457647 AATCCATAAGCAAGAGCAGCTGCAGTTGGTTCATTGATTATTCGAATTGCATTCAATCCA 457588 Query 322301 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 322360 |||||| | || | ||| |||||||||||||| |||||| |||||||| |||||| Sbjct 457587 GCAATTGTTGCTGCATCTTTTGTTGCTTGTCTCTGACTGTCATTGAAATATGCAGGTACA 457528 Query 322361 GTAATAACTGC 322371 ||||| ||||| Sbjct 457527 GTAATCACTGC 457517 Score = 93.3 bits (102), Expect = 3e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 322256 GCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAA 322315 || ||||||||||||||||| |||||| || ||| | || |||||| | || | | Sbjct 455857 GCAGCTGCAGTTGGTTCATTGATTATTCGAATTGCATTCCATCCAGCAATTGTTGCTGCA 455916 Query 322316 TCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGC 322371 || |||||||||||||| |||||| |||||||| ||||||||||| ||||| Sbjct 455917 TCTTTTGTTGCTTGTCTCTGACTGTCATTGAAATATGCAGGTACAGTAATCACTGC 455972 Score = 87.8 bits (96), Expect = 1e-11 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 635663 CGATATGGTAGTATTATGATTCTTGCTGATCAAGATGTTGATGGGTACCATATCAAAGGA 635722 || |||||| || || ||||||| ||||||||||||| || || |||||| |||||| Sbjct 91181 CGTTATGGTCGTCTTCTGATTCTAGCTGATCAAGATGAAGACGGTAGCCATATTAAAGGA 91122 Query 635723 TTAATCATGAATTTTATCCATTGTTTTTGGCCATCTCTCGTTAAATACGA-AGGGTTTAT 635781 | |||| |||||||| || |||||||| ||| || | | | || || || Sbjct 91121 CTCGTCATCAATTTTATTCACAAGTTTTGGCCGAGTCT-TATACGTTCTAGAGATTTCAT 91063 Query 635782 TCAATCATTTGCAACTCCACTATTAAAAGCCACCAAAGGA 635821 |||||||||| |||||||| ||||||| | |||||| Sbjct 91062 TCAATCATTTCGTACTCCACTTCTAAAAGCAAAGAAAGGA 91023 >seq3658 Length=1447888 Score = 250 bits (276), Expect = 2e-60 Identities = 534/782 (68%), Gaps = 23/782 (3%) Strand=Plus/Plus Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 ||||||||| |||||| | ||||||||||| || || | || | ||| || |||| Sbjct 1288801 AATCAATTCTTTCGAAAAGTGAATCAACTTCGATTGTGGCTTCGGATGAACTCGAAAGTG 1288860 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA 517970 | ||| || |||||| |||| || | || | ||| | ||| || |||| | | Sbjct 1288861 TCCTTTTGGCTCGTTCAAATGCAGTTCGAAGACGTCGAATGGCACGTG--GATTCGGTGA 1288918 Query 517971 AATCTGTTTTATATT--TTCTCTTGAAATCTTCAACACACCATGTTACAAGA--CGATTA 518026 ||| | ||| | | |||||||||| || | | | | |||| | | | | | Sbjct 1288919 AATATCTTTGCCAGTCTTTCTCTTGAATTCATTCATAAAG--TGTTGAAGCATTCTCTGA 1288976 Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 || |||||||| ||||| | | ||||| || | || | | | |||| ||| | | Sbjct 1288977 TCGAAATCTTCTCCTCCGAGATGAGTATCACCAGCTGTTGATTTCACTTCGAATATTGAT 1289036 Query 518087 TCTTCAAGAGACAAAAGAGTT---ACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 ||||| | ||||| || |||||| || || || || | ||| || || | | Sbjct 1289037 CCTTCAGAAATGGAAAGAATTGAAACATCAAAAGTACCTCCTCCAAGATCGAATATCAAT 1289096 Query 518144 ACATTCATTTCTTTGTCTTGGTT-TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 |||||| | |||| | ||| | |||||| | ||||| |||| |||||| |||||||| Sbjct 1289097 ACATTCTTCTCTTCG-CTTATTCCTTTATCCAATCCATAAGCAAGAGCAGCTGCAGTTGG 1289155 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 |||||| || |||| | |||| | ||||||||| || |||||||||| || ||||| Sbjct 1289156 TTCATTGATTATTCGAATTGCATTCAATCCAGCAATTGTTGCTGCATCTTTTGTTGCTTG 1289215 Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACC 518322 ||| || || || ||||||||||| |||||||| || ||||| ||| | | || Sbjct 1289216 TCTCTGACTGTCATTGAAATATGCAGGTACAGTAATCACTGCATCTTTTATCGCATGTCC 1289275 Query 518323 AATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAA-AATCATTGATGAAATTTGTTCTG 518381 || ||| | ||||||| ||||| || || || | ||||| ||| |||| ||||| Sbjct 1289276 AACATATGTTTCCGCCGTTTCCTTCATCTT-CTGAAGTACCATTGCTGAGATTTCTTCTG 1289334 Query 518382 GGGAATATTGC--TTGGATTCATTTTGATATGATACTTCAAAATATGGTTT--ATTACCA 518437 | ||||| || || ||| || | | ||||||| |||||| || Sbjct 1289335 GATTGAATTGCCGTTTCTCTC-CTTTCATTTCA-ACTTCAATCACTGGTTTCCCTTGTTT 1289392 Query 518438 ACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAA 518497 | || | ||| ||||||||| | ||| |||||||| || || |||| |||| Sbjct 1289393 TCCTT--TTACTCCAAATGGCCAATGTTTGCAGTCTGATTGGACTGTTGACTCATCAAAA 1289450 Query 518498 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGA 518557 ||| ||||| |||||||||||||| || | ||| || ||||||| || |||||| Sbjct 1289451 CGTCTTCCAATCAATCGTTTTGCATCGAATACAGTGTTCTCTGGATTACGAGCTGCTTGA 1289510 Query 518558 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 518617 | ||| ||||||||||||| || ||||||| || || |||| ||||||||||| ||| Sbjct 1289511 TCTTTTGCTGCATCTCCAACCAATCGTTCTGTATCAGTGAATGCGACATATGATGGTGTT 1289570 Query 518618 GT 518619 || Sbjct 1289571 GT 1289572 Score = 111 bits (122), Expect = 1e-18 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 322241 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 322300 || || || |||||||| ||||||||||||||||| |||||| || ||| || || Sbjct 1289127 AATCCATAAGCAAGAGCAGCTGCAGTTGGTTCATTGATTATTCGAATTGCATTCAATCCA 1289186 Query 322301 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 322360 |||||| | || | ||| |||||||||||||| |||||| |||||||| |||||| Sbjct 1289187 GCAATTGTTGCTGCATCTTTTGTTGCTTGTCTCTGACTGTCATTGAAATATGCAGGTACA 1289246 Query 322361 GTAATAACTGC 322371 ||||| ||||| Sbjct 1289247 GTAATCACTGC 1289257 >seq3663 Length=2118579 Score = 178 bits (196), Expect = 1e-38 Identities = 561/871 (64%), Gaps = 65/871 (7%) Strand=Plus/Plus Query 517141 ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAA 517200 |||| ||| ||||||| || ||||| | | ||| | ||||| | | ||| || || Sbjct 362088 ATCTTCTTTCTCAAATTGCTTCGCTTCGTTCACCATACGATCAATATCACCTTGCGACAA 362147 Query 517201 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGC 517260 |||||| | ||| |||||| || || ||||| |||||||| || | || Sbjct 362148 TCTTCCCTTTTCATTTCGAATAGTGATTCGATTCGATTTTCCGGTTGATTTGTCTTCAGC 362207 Query 517261 AGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCC 517320 | || || ||||| ||||| ||||| | ||| || |||||||||||||| || || || Sbjct 362208 GGATACGTTCAGAATTCCATTCGCATCGATATCGAAAGTGACTTCAATTTGTGGAACTCC 362267 Query 517321 TCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 517380 | ||||||| || || || | | ||||| || ||| | |||||| ||| Sbjct 362268 ACGTGGAGCAGGAGGAATTCCAGAGAGTTCGAATGTACCAAGACGGTGATTATCACGAGT 362327 Query 517381 GAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGT 517440 | | ||||| || || | | ||| || |||| | |||||| || ||||| || Sbjct 362328 CATTGCACGTTCTCCTTCATAGACTTGAATGAAAACTGATGCTTGATTGTCAGAATATGT 362387 Query 517441 TGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCAT 517500 || || | | || ||| |||||||| || ||||||||||||||| | ||||| Sbjct 362388 GGTGAAAGTTTTCGAAGCTTTTGTTGGAATTGTGGTATTTCTATCAATAATACTAGTCAT 362447 Query 517501 AATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATT 517560 || || || || ||||| | |||||| | || | ||||| || || | | || Sbjct 362448 AACTCCTCCAGCAGTTTCAATTCCAAGACTCAATGGTGCAACATCGACAAGCAATACATC 362507 Query 517561 TTGAAGTTTTTCATCAGTTTGA--CCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 517618 | | | | || || ||||| ||| ||| | ||||||||| | |||||| ||| || Sbjct 362508 CTTGATTGTGTCGTC--TTTGACTCCAGAAAGTACAGCTGCTTGGACAGCAGCTCCAAAT 362565 Query 517619 GCAACAGCTTCATCAGGATT-----AACAGTTTCATT----TAGTTTTTTACCATTGAAA 517669 || ||||||||||| ||||| |||| ||| ||| || || ||| || || Sbjct 362566 GCGACAGCTTCATCCGGATTTATTGAACAATTTAATTCCTGTAAGTTATTA-AATAGATT 362624 Query 517670 AAATT---------TGAA---AGAAGTT-----------------GTCTT---------- 517690 ||||| ||| |||| || ||||| Sbjct 362625 AAATTCATCAGTCGAGAATTCAGAACTTACCTTTCCATTGAAAAAGTCTTTGAGCATCTT 362684 Query 517691 ----ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTT 517746 | ||| |||| ||||| |||||||||||| || || | ||||| | || |||||| Sbjct 362685 TTGAATCTTTGGAACACGAGTTGATCCTCCAACCAAAACGACTTCATCAATCTTTGATTT 362744 Query 517747 ATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTC 517806 || ||||| |||||| | | | || ||||| ||||||||| | | |||| || Sbjct 362745 GTCAAGTTTCGAATCCCGGAGAGCCTTCTCAACTGGTTCAAGAGTCTTACGGAACAGATC 362804 Query 517807 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAA---GAGTG-ACATTATAATCAATTCCTT 517862 | ||| | |||||| || ||| | |||| ||| | ||| |||||||||||| Sbjct 362805 AGCACATAATTCTTCAAAACGAGCACGTGTAATTCGAGAGCACA----AATCAATTCCTT 362860 Query 517863 CGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC 517922 |||| | ||||| ||||| | || | || | ||| ||| |||| | || || | Sbjct 362861 CGAAAAGCGAATCGACTTCGACAGTTGCTTCCGATGAACTAGAGAGTGTCCTCTTGGCTC 362920 Query 517923 GTTCACATGCTGTCCTTAGTCTTCGTAAGGC 517953 ||||||| || || | || | ||| | ||| Sbjct 362921 GTTCACAAGCAGTTCGAAGGCGTCGAATGGC 362951 Score = 95.1 bits (104), Expect = 9e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 518451 TAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 518510 |||| ||||| | ||| |||| ||||||| | |||| ||| ||| ||||| | Sbjct 363233 TAAACGGCCAATGTTTACAATCTTCTTGAACAACTGACTCATCGAAACGTCTTCCAATCA 363292 Query 518511 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCAT 518570 |||||||||||| |||| ||||| ||||| ||||||||||| ||| || | || Sbjct 363293 GTCGTTTTGCATCGAAAACCGTATTCTCAGGATTCCGTGCAGCTTGATCTTTTGCAGAAT 363352 Query 518571 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 518630 |||||| || |||| || || || |||| ||||| ||||| || || || |||| Sbjct 363353 CTCCAACGAGTCGTTCAGTGTCAGTGAATGCCACATAAGATGGTGTCGTCTTGTTTCCTT 363412 Query 518631 GATCATTCGCAATAATTTCAAC 518652 || |||| |||||||| Sbjct 363413 CGGAGTTGGCAAGGATTTCAAC 363434 >seq3636 Length=634842 Score = 131 bits (144), Expect = 1e-24 Identities = 432/663 (65%), Gaps = 23/663 (3%) Strand=Plus/Plus Query 517658 TTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCC 517716 || ||||||||||||| ||| | || ||| | ||| |||| | | || ||||| Sbjct 358339 TTTCCATTGAAAAAATCCTTAAGCAATT-TCTGAATCTTCGGAACTCTCGTGGAACCTCC 358397 Query 517717 AACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTC 517776 || || |||| ||||| | ||| ||||| | |||| ||| || | ||||| Sbjct 358398 GACCAACACAACTTCATCAATGTGTCCCTTATCTATCTTTGCATCTCTCAATGCCTTTTC 358457 Query 517777 AACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGT 517836 |||||| || | | || ||||| || | |||||||||||||||| ||| | || Sbjct 358458 AACGGGCTCCAATGTCTTTCGGAACAAATCAGCACAAAGTTCTTCGAATCGAGCACGTGT 358517 Query 517837 AAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGT 517896 | || || | ||| |||| || ||||| ||||| ||||| | |||| | || Sbjct 358518 GATTTTGGAATAGAAGTCAGTTCCATCAAACAAGGAATCCACTTCTACAGTAGCCTCGGT 358577 Query 517897 CGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT 517956 || || | || | || ||||||||||| ||||| | || | || | || Sbjct 358578 AGAGCTGGACAATGTTCTCTTGGCACGTTCACAAGCTGTTCGAAGGCGGCGAATAGCACG 358637 Query 517957 TGCTGATTGATTCAAATCTGTTTTATATTTTCTC--TTGAAATCTTCAACACACCATGTT 518014 || |||| |||| | |||| ||| | ||||| || | | | | ||||| Sbjct 358638 TG--GATTCGGAGAAATGTCTTTTCCGGTTTTCCGTTTGAACTCATTCATAAA--ATGTT 358693 Query 518015 ACAAGACGATTAT-----CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTC 518069 || ||| | | |||||||||||||| | | ||||| ||| | |||| || Sbjct 358694 G---GAGCATTCTGGAGTCGAAATCTTCACCTCCGAGATGAGTATCTCCGGCGGTAGATC 358750 Query 518070 TTACTTGGAAAAG---TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCAC 518126 | |||| ||||| ||| || | | || | || | |||||| || ||||| | Sbjct 358751 TCACTTCGAAAATGGATCCTTCAGCGATCGATAGAATTGATACATCGAATGTACCACCTC 358810 Query 518127 CCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT--TTATCAAGACCATACGC 518184 ||| ||| || || | || || ||||| ||| || || || | || || || Sbjct 358811 CCAAATCGAAGATCAAAACGTT--TTTCTCCTCATTGATTCCCTTGTCCAATCCGTAAGC 358868 Query 518185 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 518244 | |||||| |||||||||||||| || || | | | |||| ||||||||||| || | Sbjct 358869 GAGAGCAGCTGCAGTTGGTTCATTGATGATACGAATAGCATTGAGACCAGCAATGGTTGC 358928 Query 518245 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 |||||||| || ||||| | || || || || || ||||| |||||||| || || Sbjct 358929 AGCATCTTTGGTAGCTTGACGCTGACTGTCATTGAAGTAGGCAGGTACAGTAATCACAGC 358988 Query 518305 ATC 518307 ||| Sbjct 358989 ATC 358991 Score = 118 bits (130), Expect = 8e-21 Identities = 319/488 (65%), Gaps = 0/488 (0%) Strand=Plus/Plus Query 517151 TCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGA 517210 || |||| ||| ||||| | | |||||| || |||| | || ||| |||||||| Sbjct 357747 TCGAATTGTTTCGCTTCATTGACCATTCTATCGATTTCAATTTGAGACAATCTTCCCTTC 357806 Query 517211 TTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTA 517270 | ||| || || ||| || || || || |||||||| | || | |||||| Sbjct 357807 TCATTGCGGATTGTGATACGGTTAGACTTTCCAGTGGATTTATCCTCAGCCGACACATTC 357866 Query 517271 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 517330 | || || || || || | |||||||||||| || ||||| ||||| || | | || Sbjct 357867 AAGATTCCGTTTGCGTCAATATCAAATGTGACATCGATTTGTGGGACTCCACGTGGTGCT 357926 Query 517331 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 517390 ||||| || || ||| | ||| |||||||| | ||||||| ||| | || Sbjct 357927 GGTGGTATTCCAGTCAATTCAAACGTTCCCAGTCGGTGATTATCTCGAGTCATGGCACGC 357986 Query 517391 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 || || ||| | | ||| |||| ||| | | ||||||||| | ||| || || || Sbjct 357987 TCTCCTTCGTAGACTTGAATAGAAACACCCGGTTGATTATCAGCATAGGTAGTGAAGGTC 358046 Query 517451 CTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCT 517510 | ||| |||| ||||| ||||| | || || | ||| ||||| | || || Sbjct 358047 TTCGATGCTTTAGCTGGAATGCGAGTGTTACGGTCGATGAGATTTGTCATCACTCCTCCG 358106 Query 517511 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 517570 || || || | |||||| | || | |||||||| || | || | || | | || Sbjct 358107 GCAGTCTCAATTCCAAGACTCAATGGGGCTACATCAACAAGTAAAACGTCTTTGATTGTT 358166 Query 517571 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 ||||| | || ||||| || ||||||| ||| || || | || || ||||| Sbjct 358167 TCATCCTTCACTCCGGAGAGAATTGCAGCTTGAACAGCTGCGCCGAAAGCGACGGCTTCG 358226 Query 517631 TCAGGATT 517638 || ||||| Sbjct 358227 TCTGGATT 358234 >seq2032 Length=7970 Score = 123 bits (136), Expect = 2e-22 Identities = 158/214 (74%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||| |||||| ||||||||||||||||| ||||| || | ||| Sbjct 2471 TTTTTGTCCATACCGAACGCAAGTGCAGCAGCAGTTGGTTCGTTAATGATACGTTTAACT 2412 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 | ||||||||||| | || |||||||| || ||||| | ||||| ||| || || || Sbjct 2411 TCTAGACCAGCAATACGACCAGCATCTTTTGTTGCTTGACGTTGTGCATCATTGAAGTAA 2352 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCC-GTTTG 518343 |||||||| |||||||| || || ||||| | ||| | ||||| || || |||| Sbjct 2351 GCAGGAACTGTAATAACAGCTTCTGTTAC-TGTTTCCTAATAT-----CTCCCCAGTTTT 2298 Query 518344 TTTCATTTTACTTAAAATCATTGATGAAATTTGT 518377 ||||||||| || |||| || ||||| ||| Sbjct 2297 TTTCATTTT--TTCAAATTTCTGCAGAAATCTGT 2266 >seq3669 Length=3217881 Score = 122 bits (134), Expect = 7e-22 Identities = 254/372 (68%), Gaps = 11/372 (3%) Strand=Plus/Plus Query 635406 ATGCTCACAAGGCAGGAACCAAAGAAGGATATA-AATGTACCCTAATTTTGACAGAGGGA 635464 ||||| || | ||||| || |||||| | | ||||||| | || | || |||||| Sbjct 1315057 ATGCTAACGACGCAGGTAC-AAAGAACTCTCAACAATGTACTTTGATCCTTACTGAGGGA 1315115 Query 635465 GATTCAGCTAAAACATTCGCTATGTCTGGTCTTAATGTTATTGGAAGAGATTATTATGGA 635524 ||||| |||||||| || || | ||||| || |||| | || | || | | |||| Sbjct 1315116 GATTCTGCTAAAACTTTGGCAGTTTCTGGACTGGCTGTTGTCGGTCGTGACAAGTTTGGA 1315175 Query 635525 GTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaaaaaaTTGCT 635584 || ||||||||| ||||||| ||| | |||||| | || | | | || ||||||| Sbjct 1315176 GTGTTCCCACTTCGAGGAAAGCTTCTCAATGTTCGTGACGGAAATATGAAGCAAATTGCC 1315235 Query 635585 GATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTT--GAACAAG--GAAA--- 635637 || |||| ||||| | ||||| | ||||| | || ||| | ||||| |||| Sbjct 1315236 GACAATGCTGAAATCAATGCAATGATCAAAATCCTCGGTCTTCAGTACAAGAAGAAATAC 1315295 Query 635638 -AG-TTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGATCAA 635695 || | |||||| ||||| | | || || || | || ||| || | |||||||| Sbjct 1315296 GAGACGGAAGATGATTTCAAAACTCTTCGTTACGGAAAAATGATGGTTATGGCTGATCAG 1315355 Query 635696 GATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTTTATCCATTGTTTTTGGCCA 635755 ||| || || | || |||||||| | | || || ||| | ||| ||| |||||| Sbjct 1315356 GATCAGGACGGCTCTCACATCAAAGGTCTCGTTATCAACTTTGTTCATCATTTCTGGCCA 1315415 Query 635756 TCTCTCGTTAAA 635767 |||||| || || Sbjct 1315416 TCTCTCATTCAA 1315427 >seq3667 Length=2326506 Score = 100 bits (110), Expect = 2e-15 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 |||||| | ||||| |||| |||||||||||||| || ||||| | | | || || Sbjct 1302839 TTTATCCAATCCATAGGCAAGTGCAGCAGCAGTTGGCTCGTTAATGACACGAAGGACGTT 1302898 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 ||||| | |||| ||| ||||| ||||||||||||| || ||||| || ||||| || Sbjct 1302899 GAGACCGGAAATTTGTCCAGCATCCTTAGTGGCTTGTCGCTGAGAATCATTGAAATAAGC 1302958 Query 518287 AGGAACAGTAATAACGGC 518304 |||||||| | ||| || Sbjct 1302959 TGGAACAGTGACAACAGC 1302976 >seq3545 Length=268503 Score = 93.3 bits (102), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 668822 AAAGTCACTAAATCAATGTCTGAAAGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAAT 668881 ||| ||| | || ||| ||||||||| | ||||| ||||| ||| | |||||| Sbjct 8208 AAAATCAATCAAACAACGTCTGAAAG--------GAAAAGAGGGTCGAATTCGTGGAAAT 8259 Query 668882 TTGATGGGAAAACGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCCAATATT 668941 ||||||||||||||||| ||| | || || ||||| || ||||| | ||||| ||| | Sbjct 8260 TTGATGGGAAAACGTGTGGATTTCTCGGCGCGTACTGTAATTACAGCCGATCCGAATCTC 8319 Query 668942 GCTCTCAATGAAGTTGGTGTTCCTCTTATTATTGCTAAAAATCTTACTTT 668991 | || || ||| ||||| || | | || ||| ||||||| || || Sbjct 8320 CCAATCGATACAGTCGGTGTGCCGCGAACAATCGCTCAAAATCTGACATT 8369 >seq3470 Length=172114 Score = 91.5 bits (100), Expect = 1e-12 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 367000 GCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTAT 367059 || ||||| |||||||| ||||| || ||||||| |||||| || |||| || ||||| Sbjct 54971 GCTACAATTGCATTTGGGATGGGAATCGATAAACCAGATGTTCGATTTGTCATCCATTAC 54912 Query 367060 GGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGGA 367119 | ||| || || ||||| || |||||||| | ||||||||||||| | |||||| Sbjct 54911 AGTCTTCCGAAATCAATCGAAGGATACTATCAAGAGACTGGTAGAGCAGGTAGAGATGGA 54852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780640282511020