Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3663 150 2e-31 seq3649 93.3 5e-14 >seq3663 Length=2118579 Score = 150 bits (166), Expect = 2e-31 Identities = 638/1006 (63%), Gaps = 65/1006 (6%) Strand=Plus/Plus Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 |||||| | ||||||||||| || |||||| |||| | ||| |||||||| ||| Sbjct 1959481 ATCAAGTGCTCCAACCTCTGCACTGAAATCATGGAGTACTCAGCTCCAGATGAGATCGCT 1959540 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 112496 || || || || || || |||||| | || || ||||||| |||| || Sbjct 1959541 GTCTGCAATCTTGCTTCGATCGCTTTGAATCGTTACGTCACTCCAGAG---AAGAAGTTC 1959597 Query 112497 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATT 112556 |||| | || || |||||| || ||| | || || || || |||| | || Sbjct 1959598 GATTTCAAGAAGCTTGCCGAAGTCACCAAAGTCATAACGAAGAATCTCAACAAGATCATC 1959657 Query 112557 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 ||| || | ||||| ||||| |||||||| || || ||| | || ||||| ||| Sbjct 1959658 GATGTCAACTACTACCCAGTTGAAGAAGCTCGTAACTCGAACATGCGCCATCGTCCTATT 1959717 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 112676 ||||| || || ||||| || || ||| ||||| | || | |||| ||| Sbjct 1959718 GGTCTTGGAGTTCAAGGACTTGCTGATTGCTTCATGTTGATGCGTTATCCATTCACTTCG 1959777 Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAG 112736 | |||| | || |||| | | || ||||| || || || |||| ||| | || Sbjct 1959778 AAACAAGCCAGAGATCTCAACAAGAGAATCTTTGAAACGATCTACTACGCTGCTTTGGAA 1959837 Query 112737 GCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 || |||| |||||||| ||| || || |||||| || | |||||| ||||||| Sbjct 1959838 GCCAGTTGCGAGTTGGCTGAGAGAGACGGACCATATTCGACATATGAGGGATCTCCAGTG 1959897 Query 112797 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTG 112855 || |||| ||||| || || ||||||| || | ||||| | ||| | |||||| Sbjct 1959898 TCGAAAGGACAACTTCAGTTCGACATGTGGG-GTGTCACACCAACCGATCAATGCGACTG 1959956 Query 112856 GGACGCTCT---CAAGGAA--CGCATC--AAG------GAGA------------------ 112884 || |||||| ||| || ||| | ||| |||| Sbjct 1959957 GGCCGCTCTTCGCAAAAAAATCGCCACGTAAGTGAATTGAGAATCACAATATAATTTTAA 1960016 Query 112885 -----------------AGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGC 112927 | || | || ||||||||| ||||||| ||||||||||| || Sbjct 1960017 TTGAAATTTTTTCAGACACGGAATCCGCAACAGTCTTCTGATGGCTCCAATGCCAACTGC 1960076 Query 112928 CTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 || || || ||||| | || || ||||| | |||| || ||||| | |||||||| Sbjct 1960077 TTCTACTGCTCAAATTCTTGGAAACAATGAGTCGATTGAGCCATACACCTCAAACATCTA 1960136 Query 112988 TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCT 113047 | | | || | ||||| || ||| ||||| ||| | | | || | Sbjct 1960137 TTCTCGTCGTGTTCTTTCTGGAGACTTCCAGATAGTCAATCCACATATGCTCAAGGATTT 1960196 Query 113048 CAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCATGGTGAA-AGCGGGTG 113103 |||| || | ||| | | || |||||| | ||||| | || | | | Sbjct 1960197 GGTTGAGAGAGGATTGTGGACTGATGAAATGAAGAACCGCCTCATAGCCAACAAC----G 1960252 Query 113104 GTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTT 113163 | |||||||| || || || || |||| ||| |||||| || | || | ||| || | Sbjct 1960253 GATCCATTCAGAACATCCCAGAAATCCCAGCTGACATTAAGGAGCTCTATCTCACTGTGT 1960312 Query 113164 GGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATC 113223 |||||||| ||||| ||||||| ||||| || |||||||| |||||||||| Sbjct 1960313 GGGAAATCTCTCAAAAGGAAATCATTGAGATGGCTGCTGATCGTGGAGCATTCATTGATC 1960372 Query 113224 AAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAA-CGATG-TCCAAGCTCTCTTCTAT 113281 || |||| | | ||| | ||||| | |||| | | | | ||| || |||| || Sbjct 1960373 AATCTCAATCTCTCAATATTCACATGGCTAAACCAAGCTACGCTGCAA--TCACTTCGAT 1960430 Query 113282 GCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 |||| | ||| | |||||| | || || || || || ||||| ||| Sbjct 1960431 GCACTTCTACGGATGGAAGCAAGGCCTTAAGACTGGAATGTACTAC 1960476 >seq3649 Length=974952 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 102122 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAAAGTCGCGTTCCTTTGCT 102179 |||| ||||| || || ||||||||||||||| | | |||| |||| | || || Sbjct 67428 TCAAGAAGAAGGCCGACTGGGCTATGAAGTGGATCTCGGACAAGAAGGCGT-CGTTCGCC 67486 Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 || || ||| |||| || || ||| || || ||||||||| ||| || ||| | | Sbjct 67487 GAACGTCTCATCGCCTTCGCCGCTGTCGAAGGAATCTTCTTCAGTGGATCGTTCGCCTCA 67546 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | ||||||||||||||||| ||||||||||| | |||||| ||||| ||| Sbjct 67547 ATCTTCTGGCTCAAGAAGCGAGGACTCATGCCAGGATTGACACACTCCAATGAGCTCATC 67606 Query 102300 TC 102301 || Sbjct 67607 TC 67608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620713923442400