Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3663 105 8e-18 >seq3663 Length=2118579 Score = 105 bits (116), Expect = 8e-18 Identities = 222/328 (68%), Gaps = 5/328 (2%) Strand=Plus/Minus Query 110103 ATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGC 110162 ||| || || || ||||| || |||||||| || ||||| |||||| ||| ||||| Sbjct 1959744 ATCAGCAAGTCCTTGAACTCCAAGACCAATAGGACGATGGCGCATGTTCGAGTTACGAGC 1959685 Query 110163 AGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTT 110222 ||| || ||||| ||||| ||||||| | |||||||||||||| | || Sbjct 1959684 TTCTTCAACTGGGTAGTAGTTGACATCGATGATCTTGTTGAGATTCTTCGTTATGACTTT 1959625 Query 110223 CGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGG 110282 |||| ||| || || | | |||||||| ||| |||| | |||| || Sbjct 1959624 GGTGACTTCGGCAAGCTTCTTGAAATCGAAC---TTCTTCTCTGGAGTGACGTAACGATT 1959568 Query 110283 GAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAAT 110342 | ||| || || ||||||||||| |||| |||| ||| | | ||| |||| || Sbjct 1959567 CAAAGCGATCGAAGCAAGATTGCAGACAGCGATCTCATCTGGAGCTGAGTACTCCATGAT 1959508 Query 110343 TTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTG-GAGT 110401 ||| || || | |||||| | ||| ||| || | || | ||| || || ||| || | Sbjct 1959507 TTCAGTGCAGAGGTTGGAGCACTTGATGGTTCCGAGATTTTGCTGGTTGGACTTGCGATT 1959448 Query 110402 TGCATGCATCCTTATAGAGCATGTATGG 110429 ||| ||||| || ||| |||||||| Sbjct 1959447 GGCA-GCATCTTTGTAGGTGATGTATGG 1959421 Score = 102 bits (112), Expect = 1e-16 Identities = 297/454 (65%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 109401 CTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCAT 109460 ||||| ||| | || ||||| || || || || || ||||||| |||| | ||||| Sbjct 1960488 CTTCGTGCGCAAGTAGTACATTCCAGTCTTAAGGCCTTGCTTCCATCCGTAGAAGTGCAT 1960429 Query 109461 TGAAGAGAGTTTGGAAAGTGTC--GGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 |||| || ||| | || | || | |||| | || | || ||||| ||| Sbjct 1960428 CGAAGTGA--TTGCAGCGTAGCTTGGTTTAGCCATGTGAATATTGAGAGATTGAGATTGA 1960371 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAG 109578 || |||||| ||||||||||| ||||| || ||||| |||||| |||||||| Sbjct 1960370 TCAATGAATGCTCCACGATCAGCAGCCATCTCAATGATTTCCTTTTGAGAGATTTCCCAC 1960311 Query 109579 ACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCA 109638 ||||| || | | ||| || ||| | || || || |||||| ||||| || || Sbjct 1960310 ACAGTGAGATAGAGCTCCTTAATGTCAGCTGGGATTTCTGGGATGTTCTGAATGGATCCG 1960251 Query 109639 CCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGA 109695 || | ||||| | |||||| || | | ||| | || || | | Sbjct 1960250 TTG---TTGGCTATGAGGCGGTTCTTCATTTCATCAGTCCACAATCCTCTCTCAACCAAA 1960194 Query 109696 TCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAG 109755 || | | | ||| ||||| | || || |||| ||| || || ||| Sbjct 1960193 TCCTTGAGCATATGTGGATTGACTATCTGGAAGTCTCCAGAAAGAACACGACGAGAATAG 1960134 Query 109756 ATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCT 109815 ||||| | ||||| || || | |||||||||| || || ||||| ||||| ||||| Sbjct 1960133 ATGTTTGAGGTGTATGGCTCAATCGACTCATTGTTTCCAAGAATTTGAGCAGTAGAAGCA 1960074 Query 109816 GTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 || ||||| |||||||| ||||||||||| |||| Sbjct 1960073 GTTGGCATTGGAGCCATCAGAAGACTGTTGCGGA 1960040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588948980726000