Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3663 140 4e-28 >seq3663 Length=2118579 Score = 140 bits (154), Expect = 4e-28 Identities = 673/1066 (63%), Gaps = 67/1066 (6%) Strand=Plus/Minus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655 |||||||| || ||||| || ||||| ||||| |||| | ||||| |||| || ||| Sbjct 1960475 TAGTACATTCCAGTCTTAAGGCCTTGCTTCCATCCGTAGAAGTGCATCGAAGTGA--TTG 1960418 Query 105656 GA-CATCG-TTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGAC 105713 | | | | |||| | ||||| || ||| | | |||| || |||||||| | Sbjct 1960417 CAGCGTAGCTTGGTTTAGCCATGTGAATATTGAGAGATTGAGATTGATCAATGAATGCTC 1960358 Query 105714 CACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGA 105773 |||| | || ||||| ||||||| ||||| |||||||||||| ||| | |||| Sbjct 1960357 CACGATCAGCAGCCATCTCAATGATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAGA 1960298 Query 105774 GATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCA 105833 | | ||| || ||| ||||||| |||| ||| || ||||| || || ||| | | Sbjct 1960297 GCTCCTTAATGTCAGCTGGGATTTCTGGGATGTTCTGAATGGA---TCCGTTGTTGGCTA 1960241 Query 105834 TGA---GATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGAT 105890 ||| | | |||||| || | | ||| | || ||| | ||| |||| | || Sbjct 1960240 TGAGGCGGTTCTTCATTTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATAT 1960181 Query 105891 GCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGT 105950 | ||||| ||| || ||||| | || | | ||||||||| | |||| Sbjct 1960180 GTGGATTGACTATCTGGAAGTCTCCAGAAAGAACACGACGAGAATAGATGTTTGAGGTGT 1960121 Query 105951 AGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTG 106010 | || |||| | ||||| || || | ||||| || || || || ||||||||||| | Sbjct 1960120 ATGGCTCAATCGACTCATTGTTTCCAAGAATTTGAGCAGTAGAAGCAGTTGGCATTGGAG 1960061 Query 106011 CCATCAAAAGACTGTTACGAAGACCCT-----------TTTC------------------ 106041 |||||| ||||||||| || | || | |||| Sbjct 1960060 CCATCAGAAGACTGTTGCGGATTCCGTGTCTGAAAAAATTTCAATTAAAATTATATTGTG 1960001 Query 106042 ------------CTT--GATGCG--TTCCTTG---AGAACATCCCAGTCGTAGTTGA--G 106080 ||| | ||| || ||| ||| | |||||||| | |||| | Sbjct 1960000 ATTCTCAATTCACTTACGTGGCGATTTTTTTGCGAAGAGCGGCCCAGTCGCA-TTGATCG 1959942 Query 106081 CTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTC 106140 ||||| | | | ||||||| || || ||||| |||| ||| ||||| ||||| Sbjct 1959941 GTTGGTGTGA-CACCCCACATGTCGAACTGAAGTTGTCCTTTCGACACTGGAGATCCCTC 1959883 Query 106141 AAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTG 106200 | ||||| ||| | || | |||||||| || || || || |||| | |||| Sbjct 1959882 ATATGTCGAATATGGTCCGTCTCTCTCAGCCAACTCGCAACTGGCTTCCAAAGCAGCGTA 1959823 Query 106201 ATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTA 106260 || || ||||||||||| | || | || |||||| | ||| |||| || Sbjct 1959822 GTAGATCGTTTCAAAGATTCTCTTGTTGAGATCTCTGGCTTGTTTCGAAGTGAATGGATA 1959763 Query 106261 GCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCG 106320 || ||| || || ||| || || |||||||| || | ||||||||| | || || Sbjct 1959762 ACGCATCAACATGAAGCAATCAGCAAGTCCTTGAACTCCAAGACCAATAGGACGATGGCG 1959703 Query 106321 CATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAG 106380 ||| || || || || || ||||| || || | || || |||| ||| || Sbjct 1959702 CATGTTCGAGTTACGAGCTTCTTCAACTGGGTAGTAGTTGACATCGATGATCTTGTTGAG 1959643 Query 106381 ATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC 106440 ||| || || | | || |||| ||| ||| || | |||| || | |||| Sbjct 1959642 ATTCTTCGTTATGACTTTGGTGACTTCGGCAAGCTTCTTGAAATCGAACTT---CTTCTC 1959586 Query 106441 TTCATTGACAT-ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCT 106499 | | |||| | || | || ||||| || || | |||||| ||||| ||||||| Sbjct 1959585 TGGAGTGACGTAACGATTCAA-AGCGATCGAAGCAAGATTGCAGACAGCGATCTCATCTG 1959527 Query 106500 TATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCT 106559 | ||| |||||| | ||||| || || | |||||| | ||| || || || | ||| | Sbjct 1959526 GAGCTGAGTACTCCATGATTTCAGTGCAGAGGTTGGAGCACTTGATGGTTCCGAGATTTT 1959467 Query 106560 TTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 106605 ||||| ||| ||| ||||| |||||| ||||| || Sbjct 1959466 GCTGGTTGGACTTGCGATTGGCAGCATCTTTGTAGGTGATGTATGG 1959421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589953734630800