Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3664 93.3 5e-14 >seq3664 Length=2010644 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 154871 TATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATG 154930 ||||||| | || || |||||||| ||||| || || ||| || |||| | | | || Sbjct 1884782 TATTATGGTCACCTATCCATCTACTCATGGAGTTTTCGAATCTTCCATTCGCGATGTCTG 1884723 Query 154931 TAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACA 154990 | | | ||||| || | || || || || ||| | |||||||| || | ||||| || Sbjct 1884722 TGATAAAGTTCACGAGCACGGAGGACAAGTTTATTTGGATGGAGCCAACATGAATGCTCA 1884663 Query 154991 GGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAA 155050 || ||| | ||| | || || ||| || || | ||| | || | || || Sbjct 1884662 AGTTGGATTGTGTCGTCCAGGAGACTACGGTAGTGACGTGTCACATTTGAATCTTCACAA 1884603 Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 |||||||||||||||||| ||||| || ||||| || || || || || || || Sbjct 1884602 AACATTCTGTATTCCACACGGAGGAGGTGGTCCAGGTGTCGGACCAATTGGAGT 1884549 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 153903 TTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGC 153962 || || || || ||| | || || ||||| | | ||||||||||| ||||||||||| Sbjct 1885980 TTGGCTCTCCAAACTCGTGAACAACATATTCGTCGTGACAAAGCAACAAGTAACATCTGT 1885921 Query 153963 ACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGTGCAGAT 154022 || ||||| || || || || |||||||||| | | ||||||| || ||||| || | Sbjct 1885920 ACTGCTCAAGCTCTTCTTGCCAATATGTCTGCAATGTATGCAGTTTACCATGGACCACAG 1885861 Query 154023 GGACTACATGCTATAGCAAGAAGAATT 154049 |||| || || || ||| ||||| Sbjct 1885860 AGACTCACTGAAATCGCTAGAGGAATT 1885834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579186228612800