Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3664 102 1e-16 >seq3664 Length=2010644 Score = 102 bits (112), Expect = 1e-16 Identities = 249/375 (66%), Gaps = 8/375 (2%) Strand=Plus/Minus Query 159409 TCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTC 159468 || || |||||||| ||||| |||||||| ||||||| |||||||| || | ||| Sbjct 1884919 TCTGCTCATGGAACAAATCCAGCATCAGCTCAGATGGCAAACATGAAAGTGGTCGTTGTG 1884860 Query 159469 AAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAAT 159528 | | |||| | | || ||||| | || ||| | | | |||||| | ||| Sbjct 1884859 GATTCTGATCACCACGGAAACATCAATTATAAGGATTTGGCGGCAAAAGCAGAGA--AAT 1884802 Query 159529 ACATTTGAAC----TGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGA 159584 | || ||| || | ||||||| | || ||||||||||| ||||| || || || Sbjct 1884801 A--TTCCAACCAGTTGGCTGCTATTATGGTCACCTATCCATCTACTCATGGAGTTTTCGA 1884744 Query 159585 AACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGA 159644 | | ||| | | | ||| | | ||||| ||| | || || || || ||| | || Sbjct 1884743 ATCTTCCATTCGCGATGTCTGTGATAAAGTTCACGAGCACGGAGGACAAGTTTATTTGGA 1884684 Query 159645 TGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGT 159704 ||| || || | ||||| || || || | ||| | ||||| ||| || || Sbjct 1884683 TGGAGCCAACATGAATGCTCAAGTTGGATTGTGTCGTCCAGGAGACTACGGTAGTGACGT 1884624 Query 159705 ATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGT 159764 | ||| | || | || || ||||||||||||||||| ||||| || ||||| || || Sbjct 1884623 GTCACATTTGAATCTTCACAAAACATTCTGTATTCCACACGGAGGAGGTGGTCCAGGTGT 1884564 Query 159765 AGGTCCTATTGGTGT 159779 || || ||||| || Sbjct 1884563 CGGACCAATTGGAGT 1884549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588024223151200