Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3658 179 8e-40 seq3618 147 5e-30 >seq3658 Length=1447888 Score = 179 bits (198), Expect = 8e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| || |||||||||||||| || || |||||||| || | |||||| Sbjct 43712 TCTGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGAAAGAGT 43771 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| |||||||| || |||||||| |||| || || ||||| || || || Sbjct 43772 TCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCC 43831 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| || || ||||| |||||||||||||| ||| ||||| || | Sbjct 43832 CTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGGAAGCCTCCACCTCCAA 43891 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | || ||||| ||||| ||||| ||||| | |||||| Sbjct 43892 GGTGATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCAT 43933 Score = 168 bits (186), Expect = 1e-36 Identities = 171/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||| || || || || ||||| ||||||||||||| | ||| Sbjct 43484 TCTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCGGACAAAGT 43543 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || || ||||| || |||||||| |||| ||| || ||||| ||||| || Sbjct 43544 ACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGTGGAATTCC 43603 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || |||||||||||||||||||||||| ||| || || || Sbjct 43604 TTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCAACCTCGAG 43663 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| | |||||||| || | || || ||||| | ||||||| Sbjct 43664 GGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCATT 43706 Score = 163 bits (180), Expect = 6e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || |||||||||||||| || || ||||| || || | |||||||| || ||||| Sbjct 42490 AACGAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGAGAGAGTTCTTCCGTCTTC 42549 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| |||| || || ||||| || || ||||| |||||||| Sbjct 42550 AAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTG 42609 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||| |||||||||||||| ||| ||| || || ||||| | ||||| Sbjct 42610 GATCTTGGCTTTGACATTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATGGTCTT 42669 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | || || ||||| | |||||| Sbjct 42670 TCCAGTGAGCGTCTTCACGAAGATTTGCAT 42699 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || ||||||||||| || || ||||| |||| |||||| | ||||| || || ||| Sbjct 42269 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCAAGTTGC 42328 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| |||| ||| || |||||||| || ||||| |||||||| || || Sbjct 42329 TTTCCAGCAAAGATGAGTCTTTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGGATCTTG 42388 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||||||||||||||| ||| ||| || || ||||| | |||||||| || Sbjct 42389 GCCTTCACGTTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATGGTCTTTCCAGTG 42448 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 42449 AGGGTCTTCACGAAGATTTGCAT 42471 Score = 156 bits (172), Expect = 9e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| ||||| || || || ||||| || | || || | |||||||| Sbjct 41259 AACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGTCCATCTTC 41318 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || ||||||||||||| ||| |||||||| || || || ||||||||||| Sbjct 41319 GAGTTGCTTTCCAGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTG 41378 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||| || ||||||||||| ||| ||||| || | || | ||||| Sbjct 41379 GATCTTGGCTTTGACATTTTCAATGGTGTCGGAAGCCTCCACCTCCAAAGTGATAGTCTT 41438 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || | ||| || ||||| | ||||||| Sbjct 41439 TCCGGTGAGAGTCTTGACGAAGATTTGCATT 41469 Score = 154 bits (170), Expect = 3e-32 Identities = 163/212 (77%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAAT-CGGCAAGAGTTCTCCCATCTT 194989 ||| || |||||||||||||| ||||| |||||||| | || |||| || | ||||| | Sbjct 42718 AACGAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCCGACAAG-GTCCGTCCATCCT 42776 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||| ||||| || ||||| || |||| || || ||||| || || || |||||||||| Sbjct 42777 CGAGTTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCTGGTGGGATTCCCTCTTTGTCTT 42836 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | || || |||||||||||| ||||| || ||| ||| || || ||||||| |||| Sbjct 42837 GGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACCTCGAGGGTAATAGTCT 42896 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| || | || || ||||| | |||||| Sbjct 42897 TTCCAGTGAGGGTCTTGACGAAGATCTGCATT 42928 Score = 152 bits (168), Expect = 1e-31 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| || |||||||| ||||| ||||| || ||||| || | |||| || | ||||| | Sbjct 41031 AACGAGATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCCGACAAG-GTCCGTCCATCCT 41089 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||||||||| || ||||| || | |||||||||||||| || || ||||| ||||||| Sbjct 41090 CGAGCTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTT 41149 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | || || |||||||||||| |||||||| || ||| || || ||||| | |||| Sbjct 41150 GGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCT 41209 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || | || || ||||| | ||||| Sbjct 41210 TTCCAGTGAGGGTCTTGACGAAGATCTGCAT 41240 Score = 143 bits (158), Expect = 6e-29 Identities = 167/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 |||||| | | ||| || ||||| || ||||| || || || ||||| || | |||| | Sbjct 41749 TCTGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAAG-G 41807 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 | | ||||||||||| ||||| || |||||||| |||| || || ||||| ||||| | Sbjct 41808 TGCGTCCATCTTCGAGTTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTC 41867 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| ||||||||||| || ||| || || ||||||||||| || ||| || |||| Sbjct 41868 CTTCCTTGTCTTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGAGGCTTCGACCTCAA 41927 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || | |||||||| || | || || ||||| | ||||| Sbjct 41928 GAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 41970 Score = 136 bits (150), Expect = 9e-27 Identities = 117/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| |||||||| |||| ||| || ||||| || || ||||| ||||||||||| || Sbjct 41599 CTAACCAGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTT 41658 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||||||||||||||| ||| ||||| ||||| | |||||||| || Sbjct 41659 AGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGT 41718 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 |||||| || ||||| | |||||| Sbjct 41719 CAAAGTCTTGACGAAGATCTGCATT 41743 Score = 129 bits (142), Expect = 1e-24 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||| ||| ||||||||||||| |||||| ||||| || || || ||||||||||| || | Sbjct 43333 GCTCACCAGCGAAGATAAGTCTTTGTTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCT 43392 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 || |||||||||||| || ||||| ||| ||||||||| || || | |||||||| | Sbjct 43393 TTGCCTTGACGTTCTCGATTGTGTCGGAAGCTTCCACTTCGAGTGTGATAGTCTTTCCAG 43452 Query 195116 TCAAAGTTTTTACGAACACTTGCATT 195141 | | ||| || ||||| | |||||| Sbjct 43453 TAAGAGTCTTGACGAAGATCTGCATT 43478 Score = 123 bits (136), Expect = 6e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||| ||| ||||||||||||| ||| || ||||| || || || ||||||||||| || | Sbjct 43058 GCTCACCAGCGAAGATAAGTCTTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCT 43117 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 || |||||||||||| || ||||| ||| ||||||||| || || | |||||||| | Sbjct 43118 TTGCCTTGACGTTCTCGATTGTGTCGGAAGCTTCCACTTCGAGTGTGATAGTCTTTCCAG 43177 Query 195116 TCAAAGTTTTTACGAACACTTGCATT 195141 | | ||| || ||||| | |||||| Sbjct 43178 TAAGAGTCTTGACGAAGATCTGCATT 43203 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| |||| || || |||||||| || ||||| |||||||||||||| Sbjct 42100 CTTACCAGCAAAGATGAGTCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTT 42159 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||| |||||||| || ||| || || || || | |||||||| || Sbjct 42160 GGCCTTCACATTCTCGATGGTGTCAGAGGCTTCGACCTCGAGTGTGATGGTCTTTCCGGT 42219 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||||| Sbjct 42220 GAGCGTTTTCACGAAAATCTGCAT 42243 >seq3618 Length=512689 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| || || || ||||| |||| |||||| | ||||| || || ||| Sbjct 495155 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCAAGTTGC 495096 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| |||| ||| || |||| || || ||||| |||||||| || || Sbjct 495095 TTTCCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTGTCTTGGATCTTG 495036 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||||||| || ||||| ||| ||| || || ||||| | |||||||| || Sbjct 495035 GCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATGGTCTTTCCGGTG 494976 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | ||||||| Sbjct 494975 AGGGTCTTCACGAAGATTTGCATT 494952 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| || || || ||||| |||| |||||| | ||||| || || ||| Sbjct 509339 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCAAGTTGC 509280 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || | |||||||| |||| ||| || |||| || || ||||| |||||||| || || Sbjct 509279 TTTTCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTGTCTTGGATCTTG 509220 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||||||| || ||||| ||| ||| || || ||||| | |||||||| || Sbjct 509219 GCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATGGTCTTTCCGGTG 509160 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | ||||||| Sbjct 509159 AGGGTCTTCACGAAGATTTGCATT 509136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109429430094890