Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3658 120 2e-22 >seq3658 Length=1447888 Score = 120 bits (132), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || ||||||||||| || ||| | | || || ||||| |||||||| || Sbjct 42509 TCCTTCTGGATATTATAGTCCGAGAGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAG 42568 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||| ||| | || | ||| |||||||| ||||| |||||| || Sbjct 42569 ATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCTTTGAC--AT 42626 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| || ||||| |||| ||| ||||| ||||| ||||| ||||||| Sbjct 42627 TCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGCGTCTTCA 42686 Query 34969 CAAAGATCTGCATA 34982 | ||||| |||||| Sbjct 42687 CGAAGATTTGCATA 42700 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| |||||||| | | | ||| |||| || ||||| |||||||| || Sbjct 41050 TCCTTTTGGATGTTGTAGTCCGACAAGGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAAA 41109 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||| |||||| | || | ||| |||||||| ||||| |||||| Sbjct 41110 ATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTC 41169 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||| || || |||| ||| ||||| ||||| ||||| ||||| || Sbjct 41170 TCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACG 41229 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 41230 AAGATCTGCATA 41241 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||| ||||| || || | ||| |||| || Sbjct 41259 AACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGTCCATCTTC 41318 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || ||||| || || || |||| |||||||||| | || | ||||| ||||| Sbjct 41319 GAGTTGCTTTCCAGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTG 41378 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | | || | || ||||| || || | || || || || Sbjct 41379 GATCTTGGCTTTGACATTTTCAATGGTGTCGGAAGCCTCCACCTCCAAAGTGATAGTCTT 41438 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| ||||||||||| || ||||| ||||| Sbjct 41439 TCCGGTGAGAGTCTTGACGAAGATTTGCAT 41468 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| | | | ||| |||| || || || ||||| || || Sbjct 41780 TCCTTCTGGATGTTGTAGTCCGACAAGGTGCGTCCATCTTCGAGTTGCTTTCCAGCGAAG 41839 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||| ||| | || | || |||||||| |||||| || || | Sbjct 41840 ATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATCTTAGCCTTCACATTT 41899 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||| || || || | || ||||| ||||| ||||| ||||| || Sbjct 41900 TCAATGGTGTCAGAGGCTTCGACCTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACG 41959 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 41960 AAGATCTGCATA 41971 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || | | | ||| | |||| ||| || ||||| || || ||||||| Sbjct 43705 TTCCTCCTCTGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCCG 43764 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | | || || ||||| |||||||| || || |||| ||||| ||| | | Sbjct 43765 AAAGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 43824 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | ||||| ||||| ||||| |||||| || || || | || ||||| Sbjct 43825 GGATTCCCTCTTTGTCTTGGATCTTGGCTTTGAC--ATTCTCAATGGTGTCGGAAGCCTC 43882 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| ||||||||||| || | || ||||| ||||| ||||| Sbjct 43883 CACCTCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCAT 43933 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || || || |||||||| | | | ||| |||| || || || |||||||| || Sbjct 42737 TCCTTTTGGATATTGTAGTCCGACAAGGTCCGTCCATCCTCGAGTTGCTTTCCGGCGAAA 42796 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||| ||| | || | ||||| ||||| ||||| |||||| Sbjct 42797 ATGAGTCTCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTC 42856 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || || || |||| ||| || || ||||| ||||| ||||| || Sbjct 42857 TCGATGGTATCGGAAGCTTCGACCTCGAGGGTAATAGTCTTTCCAGTGAGGGTCTTGACG 42916 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 42917 AAGATCTGCAT 42927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324619079747760