Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3663 149 7e-31 >seq3663 Length=2118579 Score = 149 bits (164), Expect = 7e-31 Identities = 290/428 (68%), Gaps = 3/428 (1%) Strand=Plus/Minus Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063 |||| || || || || || ||||| |||||||| | ||| ||||||| ||||| Sbjct 1960493 GCTGGCTTCGTGCGCAAGTAGTACATTCCAGTCTTAAGGCCTTGCTTCCATCCGTAGAAG 1960434 Query 47064 TGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTC 47123 ||||| ||| | | || || || |||| | || |||||||| ||||||||| Sbjct 1960433 TGCATCGAAGTGATTGCAGCGTAGCTTGGTTTAGCCATGTGAATATTGAGAGATTGAGAT 1960374 Query 47124 TGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCC 47183 |||||||| ||||| || | |||||| ||||| || | || || |||| | || ||| Sbjct 1960373 TGATCAATGAATGCTCCACGATCAGCAGCCATCTCAATGATTTCCTTTTGAGAGATTTCC 1960314 Query 47184 CATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAG---TATTTTGAATAGAT 47240 || || || ||| | | |||||||| |||||| | | | || ||||| ||| Sbjct 1960313 CACACAGTGAGATAGAGCTCCTTAATGTCAGCTGGGATTTCTGGGATGTTCTGAATGGAT 1960254 Query 47241 CCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaat 47300 || ||| |||| | ||| || | ||||| | ||| | | || ||| || Sbjct 1960253 CCGTTGTTGGCTATGAGGCGGTTCTTCATTTCATCAGTCCACAATCCTCTCTCAACCAAA 1960194 Query 47301 gtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATAT 47360 || | | ||| ||||| || || || || |||||||| || || | ||| ||| Sbjct 1960193 TCCTTGAGCATATGTGGATTGACTATCTGGAAGTCTCCAGAAAGAACACGACGAGAATAG 1960134 Query 47361 ATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCT 47420 || || || ||||| || || || ||||| ||||||| |||||||||||| || || Sbjct 1960133 ATGTTTGAGGTGTATGGCTCAATCGACTCATTGTTTCCAAGAATTTGAGCAGTAGAAGCA 1960074 Query 47421 GTAGGCAT 47428 || ||||| Sbjct 1960073 GTTGGCAT 1960066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562083013258800