Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3663 197 1e-44 seq3658 197 1e-44 seq3630 197 1e-44 seq3664 125 6e-23 seq3636 120 2e-21 seq3667 116 3e-20 seq2032 113 4e-19 seq3669 98.7 8e-15 seq3670 89.7 4e-12 seq3660 89.7 4e-12 >seq3663 Length=2118579 Score = 197 bits (218), Expect = 1e-44 Identities = 285/397 (72%), Gaps = 10/397 (3%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA--C 552267 ||||| ||||| ||||| || | ||| || || | ||||||||| | ||||||||| | Sbjct 362585 AATCCGGATGAAGCTGTCGCATTTGGAGCTGCTGTCCAAGCAGCTGTACTTTCTGGAGTC 362526 Query 552268 AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327 ||| || || | | | | || | | ||||| |||||| | || | |||||| Sbjct 362525 AAA--GACGACACAATCAAGGATGTATTGCTTGTCGATGTTGCACCATTGAGTCTTGGAA 362468 Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTA 552387 | ||||| | |||||| ||||||||| | |||| ||||||||||| || ||||| | Sbjct 362467 TTGAAACTGCTGGAGGAGTTATGACTAGTATTATTGATAGAAATACCACAATTCCA---A 362411 Query 552388 AAAAATCT-CGTGTATTTTCT--ACGTATTCAGATAATCAAACTGCTGTTACAATTCAAA 552444 |||| || || | |||| || ||||| || |||||| | | ||| |||||| Sbjct 362410 CAAAAGCTTCGAAAACTTTCACCACATATTCTGACAATCAAGCATCAGTTTTCATTCAAG 362351 Query 552445 TTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAG 552504 | | |||||||||| | | | ||| |||||| | | |||||||| || | | Sbjct 362350 TCTATGAAGGAGAACGTGCAATGACTCGTGATAATCACCGTCTTGGTACATTCGAACTCT 362291 Query 552505 AAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATG 552564 || |||||||||||||| |||||||| || ||||||||||| |||||||||||||||| Sbjct 362290 CTGGAATTCCTCCTGCTCCACGTGGAGTTCCACAAATTGAAGTCACTTTCGATATCGATG 362231 Query 552565 CCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 | ||||||||| |||| || | ||| || ||||| Sbjct 362230 CGAATGGAATTCTGAACGTATCCGCTGAAGACAAATC 362194 Score = 118 bits (130), Expect = 9e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||||||| ||||||| |||| |||| || || ||||||||||| | ||||| Sbjct 363434 GTTGAAATCCTTGCCAACTCCGAAGGAAACAAGACGACACCATCTTATGTGGCATTCACT 363375 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||||| | ||||| ||| | |||||| ||||||| | | |||||| ||| Sbjct 363374 GACACTGAACGACTCGTTGGAGATTCTGCAAAAGATCAAGCTGCACGGAATCCTGAGAAT 363315 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || |||| ||||| ||||| | ||||||||| |||| |||| || |||||| | | Sbjct 363314 ACGGTTTTCGATGCAAAACGACTGATTGGAAGACGTTTCGATGAGTCAGTTGTTCAAGAA 363255 Query 550232 GATATGAAGCATTGGCCTTT 550251 ||| || |||||||| || Sbjct 363254 GATTGTAAACATTGGCCGTT 363235 >seq3658 Length=1447888 Score = 197 bits (218), Expect = 1e-44 Identities = 358/516 (69%), Gaps = 16/516 (3%) Strand=Plus/Minus Query 550074 AAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTG 550133 |||| |||| || || ||||| ||||| | ||||| || || |||| || ||||| | Sbjct 1289583 AAGGAAACAAGACAACACCATCATATGTCGCATTCACTGATACAGAACGATTGGTTGGAG 1289524 Query 550134 ATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTT 550193 ||||||||||| ||||||| || ||||||| || ||| | || ||||| ||||| | Sbjct 1289523 ATGCAGCAAAAGATCAAGCAGCTCGTAATCCAGAGAACACTGTATTCGATGCAAAACGAT 1289464 Query 550194 TAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCC 550253 | ||||||||| ||||| |||| || || || || |||| || |||||||| || Sbjct 1289463 TGATTGGAAGACGTTTTGATGAGTCAACAGTCCAATCAGACTGCAAACATTGGCCATTTG 1289404 Query 550254 AAATTGTTAATGTTTCT---GGAAAACCTTATATTGAAGCTACTCATGAA-GGATCTGTT 550309 | || || | || ||||| ||||||| | ||||| ||| | Sbjct 1289403 GA---GTAAAAGGAAAACAAGGGAAACCAGTGATTGAAGTTGAA-ATGAAAGGA---GAG 1289351 Query 550310 AAAC---AATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACA 550366 |||| |||| |||||| |||| ||| | ||||| | ||| ||||| |||| Sbjct 1289350 AAACGGCAATTCAATCCAGAAGAAATCTCAGCAATGGTACTTCAGAAGATGAAGGAAACG 1289291 Query 550367 GCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTT 550426 || | | |||||| || | | | |||||||| || |||||||| |||||||| Sbjct 1289290 GCGGAAACATATGTTGGACATGCGATAAAAGATGCAGTGATTACTGTACCTGCATATTTC 1289231 Query 550427 AATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTT 550486 |||||| || | ||||| || |||||||| | | ||||||||| | |||| || Sbjct 1289230 AATGACAGTCAGAGACAAGCAACAAAAGATGCAGCAACAATTGCTGGATTGAATGCAATT 1289171 Query 550487 CGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGAT 550546 || || ||||||||||| ||||| ||||| ||||| |||||| | |||||| ||| | Sbjct 1289170 CGAATAATCAATGAACCAACTGCAGCTGCTCTTGCTTATGGATTGGATAAA-GGAATAAG 1289112 Query 550547 C-AAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 | |||| |||||| | || || ||| |||||| Sbjct 1289111 CGAAGAGAAGAATGTATTGATATTCGATCTTGGAGG 1289076 Score = 116 bits (128), Expect = 3e-20 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||||||||| || |||||||| || ||| | ||| |||||||| || | |||| Sbjct 43713 CTGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGG--ATATTGTAGTCCGAAAGAG 43770 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 ||||| |||||||| || |||||||| || || ||||| |||||||| || || |||| Sbjct 43771 TTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTC 43830 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCG 563430 | ||||| ||||| || || ||| || |||||| || || | | | || || Sbjct 43831 CCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTC-GGAAGCCTCCACCTCC 43889 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | ||||| ||||| | ||||| ||||| |||||||| Sbjct 43890 AAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCAT 43933 Score = 113 bits (124), Expect = 4e-19 Identities = 163/225 (72%), Gaps = 10/225 (4%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| ||||| || | ||| ||||| ||| | | ||| || ||||| || | ||||| Sbjct 42253 GAGTCGGAGGACCAAATGGAGGGTGGACTCTTTCTGG--ATGTTGTAGTCGGAAAGAGTA 42310 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | ||| |||||||| ||||| ||||| || |||||||||||||| ||||| |||||| Sbjct 42311 CGTCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGAGGGATTCCT 42370 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG-TACA--TTCG 563430 || || ||||| || || || || |||||| || |||| || | || ||| Sbjct 42371 TCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAG---AAGCTTCAACCTCG 42427 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || | || || ||||| || || || ||||| ||||||||| Sbjct 42428 AGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCATA 42472 Score = 113 bits (124), Expect = 4e-19 Identities = 160/223 (72%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAG 563311 ||||||||||| || | || || ||| ||| ||||| ||||||||||| | | || Sbjct 43485 CTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGG--ATATTGTAATCGGACAAAG 43542 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | | ||| |||||||| ||||| || || || |||||||||||||| || ||||||| Sbjct 43543 TACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGTGGAATTC 43602 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431 |||| || ||||| || || || || |||||| || || | | | |||| Sbjct 43603 CTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCAACCTCGA 43662 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | || || ||||| || || || ||||| |||||||| Sbjct 43663 GGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 43705 Score = 100 bits (110), Expect = 2e-15 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||||||||| || ||||||||||| ||| | ||| || ||||| || | | | Sbjct 41750 CTGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGG--ATGTTGTAGTCCGACAAGG 41807 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | | |||||| ||||| ||||| || || || ||||| |||||||| || ||||||| Sbjct 41808 TGCGTCCATCTTCGAGTTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTC 41867 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCG 563430 |||| || |||||||| || || || ||||| || |||| | | | | || Sbjct 41868 CTTCCTTGTCTTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGAG-GCTTCGACCTCA 41926 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||||| | || || || || || || || ||||| || |||||| Sbjct 41927 AGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCATA 41971 Score = 96.9 bits (106), Expect = 3e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| || | ||||| ||| || || || ||||| |||| || || | Sbjct 41250 GAGACGGAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTACG 41309 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 | |||||| ||||| ||||| || || |||||||||||||| || || || ||||| || Sbjct 41310 TCCATCTTCGAGTTGCTTTCCAGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCCTC 41369 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 ||| ||||| || || ||| || ||||| || || | | | || || | || Sbjct 41370 TTTGTCTTGGATCTTGGCTTTGACATTTTCAATGGTGTC-GGAAGCCTCCACCTCCAAAG 41428 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | ||| || || || ||||| || ||||| |||||||| Sbjct 41429 TGATAGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 41468 Score = 91.5 bits (100), Expect = 1e-12 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 552514 CTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAA 552573 ||| |||||| ||||| || | ||||||||||| ||||| ||||||||||| ||||||| Sbjct 1287394 CTCGTGCTCCACGTGGTGTTCGTCAAATTGAAGTCACTTTTGATATCGATGCAAATGGAA 1287335 Query 552574 TTTTGAATGTGACTGCTTGTGATAAATC 552601 | ||||||||| | ||| |||||||| Sbjct 1287334 TATTGAATGTGTCGGCTGAGGATAAATC 1287307 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 361706 CCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCT 361765 |||||||| | | ||| || |||||||| || |||||| ||| |||| | ||| || Sbjct 1289130 CCATAAGCAAGAGCAGCTGCAGTTGGTTCATTGATTATTCGAATTGCATTCAATCCAGCA 1289189 Query 361766 ATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTA 361825 ||| ||| ||||||| || ||||| | || ||||| ||||||||||| |||||| Sbjct 1289190 ATTGTTGCTGCATCTTTTGTTGCTTGTCTCTGACTGTCATTGAAATATGCAGGTACAGTA 1289249 Query 361826 ATCACTGC 361833 |||||||| Sbjct 1289250 ATCACTGC 1289257 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || || || ||||||||||||||||| || || ||||| ||||| ||||| || ||| Sbjct 43063 CCAGCGAAGATAAGTCTTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTTGCC 43122 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| ||||| || | | | || |||||| || | ||| || |||||||| Sbjct 43123 TTGACGTTCTCGATTGTGTC-GGAAGCTTCCACTTCGAGTGTGATAGTCTTTCCAGTAAG 43181 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| || ||||| || ||||| Sbjct 43182 AGTCTTGACGAAGATCTGCAT 43202 >seq3630 Length=571110 Score = 197 bits (218), Expect = 1e-44 Identities = 358/516 (69%), Gaps = 16/516 (3%) Strand=Plus/Plus Query 550074 AAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTG 550133 |||| |||| || || ||||| ||||| | ||||| || || |||| || ||||| | Sbjct 457191 AAGGAAACAAGACAACACCATCATATGTCGCATTCACTGATACAGAACGATTGGTTGGAG 457250 Query 550134 ATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTT 550193 ||||||||||| ||||||| || ||||||| || ||| | || ||||| ||||| | Sbjct 457251 ATGCAGCAAAAGATCAAGCAGCTCGTAATCCAGAGAACACTGTATTCGATGCAAAACGAT 457310 Query 550194 TAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCC 550253 | ||||||||| |||| |||| || || ||||| |||| || |||||||| || Sbjct 457311 TGATTGGAAGACGTTTCGATGAGTCAACAGTTCAATCAGACTGCAAACATTGGCCATTTG 457370 Query 550254 AAATTGTTAATGTTTCT---GGAAAACCTTATATTGAAGCTACTCATGAA-GGATCTGTT 550309 | || || | || ||||| ||||||| | ||||| ||| | Sbjct 457371 GA---GTAAAAGGAAAACAAGGGAAACCAGTGATTGAAGTTGAA-ATGAAAGGA---GAG 457423 Query 550310 AAAC---AATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACA 550366 |||| |||| |||||| |||| ||| | ||||| | ||| ||||| |||| Sbjct 457424 AAACGGCAATTCAATCCAGAAGAAATCTCAGCAATGGTACTTCAGAAGATGAAGGAAACG 457483 Query 550367 GCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTT 550426 || | | |||||| || | | | |||||||| || |||||||| |||||||| Sbjct 457484 GCGGAAACATATGTTGGACATGCGATAAAAGATGCAGTGATTACTGTACCTGCATATTTC 457543 Query 550427 AATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTT 550486 |||||| || | ||||| || |||||||| | | ||||||||| | |||| || Sbjct 457544 AATGACAGTCAGAGACAAGCAACAAAAGATGCAGCAACAATTGCTGGATTGAATGCAATT 457603 Query 550487 CGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGAT 550546 || || ||||||||||| ||||| ||||| ||||| |||||| | |||||| ||| | Sbjct 457604 CGAATAATCAATGAACCAACTGCAGCTGCTCTTGCTTATGGATTGGATAAA-GGAATAAG 457662 Query 550547 C-AAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 | |||| |||||| | || || ||| |||||| Sbjct 457663 CGAAGAGAAGAATGTATTGATATTCGATCTTGGAGG 457698 Score = 179 bits (198), Expect = 3e-39 Identities = 275/392 (70%), Gaps = 0/392 (0%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 |||||||| || || ||||| | ||| || ||| ||||||||||| | ||||||||| Sbjct 458241 AATCCAGACGAAGCAGTTGCATTTGGAGCTGCAGTTCAAGCAGCTGTACTTTCTGGAGTG 458300 Query 552270 ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTA 552329 | ||| ||| | | || || | |||| || |||||| |||| | |||||| | Sbjct 458301 AAGGATCAAACAATTAAAGATGTATTACTGGTTGATGTTGCTCCATTGAGTCTTGGAATT 458360 Query 552330 GAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAA 552389 || |||| ||| ||| | ||||| || | || ||| |||| ||| ||||| ||| Sbjct 458361 GAGACAGCTGGTGGTGTGATGACCAACTTAATTGATCGAAACACTCGAATTCCAACGAAA 458420 Query 552390 AAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTT 552449 || ||| | || ||| | ||||||||| | | ||| |||| ||| ||| Sbjct 458421 GCGTCGAAAACATTCACAACATATGCTGATAATCAACCAGGAGTTTCAATCCAAGTTTAC 458480 Query 552450 GAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGT 552509 ||||||||| | | ||| |||||| | | || || || || | | || Sbjct 458481 GAAGGAGAACGTGCCATGACTCGTGATAATCACCGTCTCGGAACATTCGAACTTTCTGGA 458540 Query 552510 ATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAAT 552569 |||||||||||||| ||||| || || ||||||||||| ||||| ||||||||||| ||| Sbjct 458541 ATTCCTCCTGCTCCACGTGGTGTTCCTCAAATTGAAGTCACTTTTGATATCGATGCAAAT 458600 Query 552570 GGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 ||||| ||||||||| | ||| |||||||| Sbjct 458601 GGAATATTGAATGTGTCGGCTGAGGATAAATC 458632 Score = 168 bits (186), Expect = 5e-36 Identities = 310/449 (69%), Gaps = 14/449 (3%) Strand=Plus/Minus Query 550074 AAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTG 550133 |||| |||| || || ||||| |||||| | ||||| || || |||| || ||||| | Sbjct 456298 AAGGAAACAAGACAACACCATCATATGTTGCATTCACTGATACAGAACGATTGGTTGGAG 456239 Query 550134 ATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTT 550193 |||| |||||| ||||||| || ||||||| || ||| | || ||||| ||||| | Sbjct 456238 ATGCGGCAAAAGATCAAGCAGCTCGTAATCCAGAGAACACTGTATTCGATGCAAAACGAT 456179 Query 550194 TAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCC 550253 | ||||||||| |||| |||| || || ||||| |||| || |||||||| || Sbjct 456178 TGATTGGAAGACGTTTCGATGAGTCAACAGTTCAATCAGACTGCAAACATTGGCCATTTG 456119 Query 550254 AAATTGTTAATGTTTCT---GGAAAACCTTATATTGAAGCTACTCATGAA-GGATCTGTT 550309 | || || | || ||||| ||||||| | ||||| ||| | Sbjct 456118 GA---GTAAAAGGAAAACAAGGGAAACCAGTGATTGAAGTTGAA-ATGAAAGGA---GAG 456066 Query 550310 AAAC---AATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACA 550366 |||| |||| |||||| |||| ||| | ||||| | ||| ||||| |||| Sbjct 456065 AAACGGCAATTCAATCCAGAAGAAATCTCAGCAATGGTACTTCAGAAGATGAAGGAAACG 456006 Query 550367 GCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTT 550426 || | | |||||| || | | | |||||||| || |||||||| |||||||| Sbjct 456005 GCGGAAACATATGTTGGACATGCGATAAAAGATGCAGTGATTACTGTACCTGCATATTTC 455946 Query 550427 AATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTT 550486 |||||| || | ||||| || |||||||| | | ||||||||| |||| || Sbjct 455945 AATGACAGTCAGAGACAAGCAACAAAAGATGCAGCAACAATTGCTGGATGGAATGCAATT 455886 Query 550487 CGTATTATCAATGAACCTACTGCTGCTGC 550515 || || ||||||||||| ||||| ||||| Sbjct 455885 CGAATAATCAATGAACCAACTGCAGCTGC 455857 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 361706 CCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCT 361765 |||||||| | | ||| || |||||||| || |||||| ||| |||| | ||| || Sbjct 457644 CCATAAGCAAGAGCAGCTGCAGTTGGTTCATTGATTATTCGAATTGCATTCAATCCAGCA 457585 Query 361766 ATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTA 361825 ||| ||| ||||||| || ||||| | || ||||| ||||||||||| |||||| Sbjct 457584 ATTGTTGCTGCATCTTTTGTTGCTTGTCTCTGACTGTCATTGAAATATGCAGGTACAGTA 457525 Query 361826 ATCACTGC 361833 |||||||| Sbjct 457524 ATCACTGC 457517 >seq3664 Length=2010644 Score = 125 bits (138), Expect = 6e-23 Identities = 194/274 (71%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 |||||||| | |||||| || |||| |||||||| | | || ||||| |||| || Sbjct 680009 AAACAATTCACTCCAGAAGAAGTTTCCGCTATGGTTCTCACCAAGATGAAGCAAATCGCT 680068 Query 550370 -AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 ||| ||| | | || || ||||| | |||| || | || || || ||||| || || Sbjct 680069 GAGT-CTTATCTCGGACACGAAGTGAAAAATGCTGTTGTCACAGTCCCGGCATACTTCAA 680127 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| | || | |||||||| |||||||||||| ||||| ||||| || ||| | | Sbjct 680128 TGATGCTCAGAGACAAGCTACCAAAGATGCTGGAACCATTGCAGGACTCAACGTTGTCAG 680187 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCA 550548 || |||||||| || || ||||| ||| |||| ||||| | |||| | || || Sbjct 680188 AATCATCAATGAGCCGACAGCTGCCGCAATTGCCTATGGGTTGGATA---AGAAAGAAGG 680244 Query 550549 AGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582 ||||| ||| | ||| |||| || | |||||| Sbjct 680245 AGAACGCAATATTCTCGTCTTCGACTTGGGAGGT 680278 >seq3636 Length=634842 Score = 120 bits (132), Expect = 2e-21 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || || |||||||| || || || |||||| || ||||||||||| ||||| Sbjct 358992 GGATGCTGTGATTACTGTACCTGCCTACTTCAATGACAGTCAGCGTCAAGCTACCAAAGA 358933 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||||| | |||||||| || |||| | ||||||| ||||||||||| ||||| ||||| Sbjct 358932 TGCTGCAACCATTGCTGGTCTCAATGCTATTCGTATCATCAATGAACCAACTGCAGCTGC 358873 Query 550516 ACTTGCATATGGACTTGATAA 550536 || || || ||| | || || Sbjct 358872 TCTCGCTTACGGATTGGACAA 358852 Score = 107 bits (118), Expect = 2e-17 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || |||||| ||||||| ||||||||| || || || || || || | ||||| Sbjct 359411 GTCGAAATTCTTGCCAACTCAGAAGGTAACAAGACCACACCTTCCTACGTGGCATTCACA 359352 Query 550112 GAAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || || | | || ||||||||||| || ||| |||||||| || ||||||| || Sbjct 359351 GATACCGAGAGACTT-GTTGGTGATGCCGCCAAAGATCAAGCCGCTCGTAATCCAGAAAA 359293 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || | || ||||| || ||| | ||||||||| | ||| | || |||||||| | Sbjct 359292 CACAGTCTTCGATGCAAAGCGTCTTATTGGAAGACGCTTTGACGAGGAAACTGTTCAATC 359233 Query 550231 AGATATGAAGCATTGGCCTTT 550251 ||||| ||||||||||| || Sbjct 359232 GGATATCAAGCATTGGCCATT 359212 >seq3667 Length=2326506 Score = 116 bits (128), Expect = 3e-20 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| ||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| Sbjct 1302967 ACTGTTCCAGCTTATTTCAATGATTCTCAGCGACAAGCCACTAAGGATGCTGGACAAATT 1302908 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 | || || || || |||||| | || || || || ||||||||||||||||| |||||| Sbjct 1302907 TCCGGTCTCAACGTCCTTCGTGTCATTAACGAGCCAACTGCTGCTGCACTTGCCTATGGA 1302848 Query 550529 CTTGATAAACAT 550540 | |||||| || Sbjct 1302847 TTGGATAAAGAT 1302836 >seq2032 Length=7970 Score = 113 bits (124), Expect = 4e-19 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 ||| || || || || || || || || || || || ||||| ||||||||||||| || Sbjct 2322 AGTAACAGAAGCTGTTATTACAGTTCCTGCTTACTTCAATGATGCACAACGTCAAGCAAC 2381 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 ||||||||||| ||||||||||| || | ||| ||||| || || ||||| ||||| Sbjct 2382 AAAAGATGCTGGTCGTATTGCTGGTCTAGAAGTTAAACGTATCATTAACGAACCAACTGC 2441 Query 550510 TGCTGCACTTGC 550521 |||||||||||| Sbjct 2442 TGCTGCACTTGC 2453 Score = 95.1 bits (104), Expect = 1e-13 Identities = 257/388 (66%), Gaps = 23/388 (6%) Strand=Plus/Plus Query 552202 AAAG-TGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTT 552260 |||| ||| || || ||||| |||||||| |||||| |||||||||| || | | Sbjct 3007 AAAGATGTGAACCCGGATGAAGCTGTTGCAATTGGTGCTGCAATTCAAGGTGCGGTATTG 3066 Query 552261 TCTGG--ACAAA-CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTA 552317 ||||| ||||| |||| | ||| || |||||| | || || || || Sbjct 3067 TCTGGTGACAAAACTGACG------TAC------TTTTACTTG---ACGTAACACCATTA 3111 Query 552318 TCTCTTGGTTTAGAAACAGTTGGAGG--TATTATGACTAATCTTATCGATAGAAATACTA 552375 | |||||| | ||||| | || || ||||| ||| |||| || | ||| || | Sbjct 3112 ACACTTGGTATCGAAACCATGGGTGGCGTATTA--ACTGCAATTATTGAGAAAAACACCA 3169 Query 552376 CTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTA 552435 | |||||| || ||||||| || |||||||| ||||||| ||| | || || Sbjct 3170 CGATTCCTGCGAAGAAATCTCAAGTGTTTTCTACAGCAGCAGATAACCAACCAGCGGTAG 3229 Query 552436 CAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTT 552495 ||| | ||| |||| ||| | ||| | || || | || || | |||| | Sbjct 3230 ATATTTCAGTTTACCAAGGTGAACGTAAAATGGCTCAACAAAACAAATTGTTGGGTAACT 3289 Query 552496 TTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCG 552555 | | |||| | ||||| ||||| || ||||| || || ||||||||||| | |||| Sbjct 3290 TCCAATTAGGCGACATTCCACCTGCGCCACGTGGTGTGCCACAAATTGAAGTATCGTTCG 3349 Query 552556 ATATCGATGCCAATGGAATTTTGAATGT 552583 | ||| |||| |||| || || || || Sbjct 3350 ACATCAATGCTGATGGTATCTTAAAAGT 3377 >seq3669 Length=3217881 Score = 98.7 bits (108), Expect = 8e-15 Identities = 243/363 (67%), Gaps = 13/363 (4%) Strand=Plus/Minus Query 429092 GAAGGCCAGAAACGATGTATTAAATTCATAATCAATCCTTTAATATGATAACCGTCCACG 429151 || ||||||||| |||| | || || |||| | ||||| || ||| | |||||| Sbjct 1315417 GATGGCCAGAAATGATGAACAAAGTTGATAACGAGACCTTTGATGTGAGAGCCGTCCTGA 1315358 Query 429152 TCTTGGTCAGCTAATATCATAATACTACCATACCTAAGTTCTTTTAGATCATTATA---- 429207 || || ||||| | | ||| || | || || | ||| ||| | ||||| | Sbjct 1315357 TCCTGATCAGCCATAACCATCATTTTTCCGTAACGAAGAGTTTTGAAATCATCTTCCGTC 1315298 Query 429208 ---TACTTTCCCTTGTTC--AAGACCAATGAtttttttGATAGCAGTTATTTCTTCATTT 429262 || || ||||| | |||||| | |||||| | || ||| | ||||| |||| Sbjct 1315297 TCGTATTTCTTCTTGTACTGAAGACCGAGGATTTTGATCATTGCATTGATTTCAGCATTG 1315238 Query 429263 TCTGCTATTTTCAACGGACTTTTTGT-ACGTACATTCAATGGTTTTCCCTTAAGTGGAAA 429321 || || |||| | | | ||| || ||| ||||| | | ||||| |||||| || Sbjct 1315237 TCGGCAATTTGCTTCATA-TTTCCGTCACGAACATTGAGAAGCTTTCCTCGAAGTGGGAA 1315179 Query 429322 TACGCCATAATAATCTCGACCAATAACATTTAGTCCAGACATTGCAAAAGTTTTAGCTGA 429381 || ||| | | || ||||| | |||| |||||||| | ||| ||||||||||| || Sbjct 1315178 CACTCCAAACTTGTCACGACCGACAACAGCCAGTCCAGAAACTGCCAAAGTTTTAGCAGA 1315119 Query 429382 ATCTCCTTCCGTCAAAATAAGTGTACATT-TATATCCTTCTTTGGTACCAGCTTTGTGAG 429440 |||||| || || | || | ||||||| | | |||||| ||||| || | || || Sbjct 1315118 ATCTCCCTCAGTAAGGATCAAAGTACATTGTTGAGAGTTCTTT-GTACCTGCGTCGTTAG 1315060 Query 429441 CAT 429443 ||| Sbjct 1315059 CAT 1315057 >seq3670 Length=4500979 Score = 89.7 bits (98), Expect = 4e-12 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 || ||||| | |||||| || | || |||||||| | | || ||||| | | ||| Sbjct 1785373 AAGCAATTCACCCCAGAAGAAGTCTCCGCTATGGTTCTCGTCAAGATGAAGGAGATCGCC 1785432 Query 550370 -AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 ||| | | | || | ||||| | | | || || | || || ||||| || || || Sbjct 1785433 GAGT-CATACCTCGGAAAGGAAGTCAAGAACGCCGTCGTCACCGTCCCAGCTTACTTCAA 1785491 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| | |||||||||||||| || || || ||| || |||||| | || ||| |||| Sbjct 1785492 TGATGCCCAACGTCAAGCTACCAAGGACGCCGGAACCATCGCTGGATTGAACGTTGTTCG 1785551 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||| ||||| || || || || || || | || || |||||||| || Sbjct 1785552 TATCATCAACGAGCCAACCGCCGCCGCTATCGCCTACGGACTTGACAA 1785599 >seq3660 Length=1640336 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 ||||| || || |||||||||||||| || ||||||||||| || ||||| || || Sbjct 486263 CCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCC 486322 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| || ||||| | | | | | |||||| |||| ||| ||||| || || Sbjct 486323 TTGACATTCTCGATGGTATCGGAG-GCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAG 486381 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| || ||||| |||||||| Sbjct 486382 AGTCTTGACGAAGATTTGCAT 486402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029101913848300