Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_016562.1 Length=132662 Score E Sequences producing significant alignments: (Bits) Value seq1843 82.4 6e-11 >seq1843 Length=6993 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 39887 CCACCACCTTGCCATTGTACTTCTTTACTAATACCACCTTGCTCACCTTCTATAACTTT- 39945 |||||||||||||| | || |||| |||||||||||| ||||| || | ||||| Sbjct 5438 CCACCACCTTGCCAATCCACCGATTTAGAAATACCACCTTGTTCACCCTCAAGGACTTTC 5379 Query 39946 TTTAAGTCTTTCTTTTGTGATAGTTTCTATATAATCCATTTGTTCTATACCTATCCATTT 40005 |||| | |||| || ||| ||| || || |||||||| || ||||| |||||| | Sbjct 5378 AGTAAG-CGAGCTTTGGTTATATCTTCGATGTAGTCCATTTGCTCAATACCAATCCATCT 5320 Query 40006 GCGTTTCATTTTATGTGCTACTGC 40029 |||| ||| || || || || || Sbjct 5319 GCGTCCCATCTTGTGAGCGACAGC 5296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424374617670010