Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_016652.1 Length=49330 Score E Sequences producing significant alignments: (Bits) Value seq2028 181 3e-41 seq1401 181 3e-41 >seq2028 Length=10780 Score = 181 bits (200), Expect = 3e-41 Identities = 521/790 (66%), Gaps = 56/790 (7%) Strand=Plus/Minus Query 516 GGTGTCTCGTTCGACCGGTGGCAGCAGGGGTTCGGGCAGATCTCGCTCGGGTG--CCGCG 573 || ||| | ||||| ||||||||| || |||| |||||| | || ||| | || Sbjct 6944 GGGGTCACATTCGATGAGTGGCAGCACGGCATCGGCCAGATCGCTCTTGGGAAGACTGCT 6885 Query 574 AATCCGGGAAGTACGCCGCTTCGATCGGTGGTGTGGTC-GC-GTCCATTCCCCGCCAGGT 631 || || |||||||| || | ||||||| | | || || ||| || || || ||||| Sbjct 6884 GAT--GGCAAGTACGCGGCGACTGTCGGTGGGG-GTTCAGCTGTCAATCCCTCGACAGGT 6828 Query 632 CGGTAAGACGTACACGGTCGGCAACCTGATCATCGGCCTGTGTCTCGAGTTCCCGGGCCT 691 |||||||| | | ||||||| | ||||||| ||||| | | ||| | || Sbjct 6827 TGGTAAGACATTCCTAGTCGGCATGATCATCATCGCGCTGTGCATTCTGACGCCGAGGCT 6768 Query 692 ACGGGTGATCTGGACGTCGCACCACAACCGCACGACGACGAACACGTTCCGATCGATGCA 751 || | ||||| |||| | || || | ||||| || |||| | ||||| Sbjct 6767 CACCGTCTTGTGGACAGCGCATCGCACGAAGACAGCAACGAAGACCTTCCAGACCATGCA 6708 Query 752 ATCGATGGTGCGGAAGAAGAAGATCTGGCCGCACGT----------CGCAGCGA-----T 796 ||||| |||||||||||| || ||| | |||| || | Sbjct 6707 GGGCATGGTCAAGAAGAAGAAGATTCGGGGCCACCTTGCTCCTGGCCGCAATGACGGTAT 6648 Query 797 CCGCACCGCCAACGGCGAGCAAGAGATCGTGTTCACCAACGGGTCGATCATCATGTTCGG 856 ||||| ||||| ||||||||||||||| |||| |||||| | ||||||||||| Sbjct 6647 TCGCACAGCCAATGGCGAGCAAGAGATCCGGTTCCGCAACGGCAGCGTGATCATGTTCGG 6588 Query 857 CGCACGCGAGCAGGGCTTCGGCCGCGGCATGGAAGCCATCGACATCGAGGTGTTCGACGA 916 ||| || ||| || ||||| || ||| | || | ||||||||||||| ||||| || Sbjct 6587 CGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGAGGTCGACATCGAGGTCTTCGATGA 6528 Query 917 AGCACAGATCCTGGGCGTGAAGGCGCTCGAGGACATGGTGCCGGCAACGAAC--GCCGCG 974 || ||||||||| || ||||||||| || |||||||| | || |||||| | | || Sbjct 6527 GGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACATGGTCGCAGCGACGAACCAGTCTCG 6468 Query 975 AAGCACGAGCACGGCGGTCTGGTGTTCTTCATCGGTACACCGCCCCGGCCGACCGA---- 1030 ||| || |||| ||| |||||||||| || || || || ||| |||| || Sbjct 6467 --GCAAAAGTCGGGCGCGCTGCTGTTCTTCATGGGCACGCCCCCGCGGGCGACTGATCCT 6410 Query 1031 --CGACGGAGAAGC-----CTTCGCGACCAAGCG-----GAAGAAGGC----CATCA--- 1071 ||| |||| || | ||| | | ||| || ||| | |||| Sbjct 6409 GGCGA-GGAGTGGCTGGAGCGCCGCAATGATGCGCTTGAGATCAAGCCGATGGATCAGGT 6351 Query 1072 --AGGGCCTGACCCGCGATCAGGTGTACGTCGAGATCTCCGCCGACCCGAACACTGACCC 1129 ||||||| | || |||||||||||| |||| || ||| | || | ||||| Sbjct 6350 TGTGGGCCTGTCGGAGGACACAGTGTACGTCGAGTTCTCGGCGGACAAGGACGCGGACCC 6291 Query 1130 GGACGATCA--GTCCAAGTTCGCCACGTTCAACCCGTCCTACCCGCACCGCACACCGCTC 1187 |||||| || | ||| || || | | ||| || || | || |||||||| |||||| Sbjct 6290 GGACGA-CATGGAACAACTT-GCGAAGGCCAATCCTTCGTTTCCACACCGCACCCCGCTC 6233 Query 1188 GAATCGATGCTGCGAATGCGGGAGAACATCCCCGACGAAGACTCATGGCGCCGTGAGGCA 1247 || ||| | |||| |||||| ||||| || |||| ||||| | |||||||| Sbjct 6232 GAGTCGGTCATGCGGATGCGGAAGAACCTCAAGAACGAGGACTCGTTCAAGCGTGAGGCG 6173 Query 1248 ATGGGGATCT 1257 ||||| |||| Sbjct 6172 ATGGGCATCT 6163 >seq1401 Length=3734 Score = 181 bits (200), Expect = 3e-41 Identities = 448/677 (66%), Gaps = 41/677 (6%) Strand=Plus/Minus Query 623 CCGCCAGGTCGGTAAGACGTACACGGTCGGCAACCTGATCATCGGCCTGTGTCTCGAGTT 682 |||||||||||| ||||||| ||| |||| | ||| ||| ||| || || || Sbjct 1257 CCGCCAGGTCGGCAAGACGTTCACCATCGGGTCGATCATCTTCGCCCTCTGCATCATCTT 1198 Query 683 CCCGGGCCTACGGGTGATCTGGACGTCGCACCACAACCGCACGACGACGAACACGTTCCG 742 |||| || ||| |||||||| |||||||| |||||| | | | |||||| Sbjct 1197 CCCGAAGCTCACGGTCATCTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGA 1138 Query 743 ATCGATGCAATCGATGGTGCGGAAGAAGAAGATCTGGCCGCACGTCGCAGC-GATCCGCA 801 ||| |||| | | | |||| |||| | ||||| || | || ||||||| Sbjct 1137 GTCGCTGCAGGGCTTCGCCCAGAAGCGGAAGGTGGCCCCGCATATC-CGGCAGATCCGCC 1079 Query 802 CCGCCAACGGCGAGCAAGAGATCGTGTTCACCAACGGGTCGATCATCATGTTCGGCGCAC 861 | ||||| |||| ||||| |||| ||||| || ||||||||||| || | Sbjct 1078 GAGTGAACGGGCAGCAGCAGATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCC 1019 Query 862 GCGAGCAGGGCTTCGGCCGCGGCATGGAAGCCATCGACATCGAGGTGTTCGACGAAGCAC 921 ||||| ||||||||||||||| | | | ||||| ||| |||| ||| || || | Sbjct 1018 GCGAGTCCGGCTTCGGCCGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGC 959 Query 922 AGATCCTGGGCGTGAAGGCGCTCGAGGACATGGTGCCGGCAACGAACGCCGCGAAGCACG 981 ||||||| ||| ||||| || |||||||||||||| || || |||||| ||||| || Sbjct 958 AGATCCTCGGCAACAAGGCCCTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACC 899 Query 982 AGCACGGCGGTCTGGTGTTCTTCATCGGTACACCGCCCCGGCCGACCGACGACGGAGAAG 1041 | || | || | || || || |||||||| || |||| ||| |||| Sbjct 898 CG---------CTCATCATCCTGATGGGCACCCCGCCCCGCCCAGTCGACCCCGGCGAAG 848 Query 1042 CCTTC------------------GCGACCAAGCGGAAGAAG---GCCATCAAGGGC-CTG 1079 | ||| |||| | ||| |||||| ||| | |||| | Sbjct 847 CGTTCCGCACCCGCCGAAACGAAGCGATCGAGCTCAAGAAGCTCGCCGCCGCGGGCGAGG 788 Query 1080 AC-CCG---CGATCA-GGTGTACGTCGAGATCTCCGCCGACCCGAACACTGACCCGGACG 1134 || ||| || || | | |||||||| || ||| ||||| || | |||| ||||| Sbjct 787 ACACCGAATCGGACATGCTCTACGTCGAACTCGGCGCAGACCCCGACGCCGACCTGGACG 728 Query 1135 ATCAGTCCAAGTTCGCCACGTTCAACCCGTCCTACCCGCACCGCACACCGCTCGAATCGA 1194 | | || |||||| | |||||| ||||||||||||||||| || | |||| ||| Sbjct 727 ACTGGGATCAGGTCGCCAAGGCCAACCCCTCCTACCCGCACCGCACCCCACGCGAAGCGA 668 Query 1195 TGCTGCGAATGCGGGAGAACATCCCCGACGAAGACTCATGGCGCCGTGAGGCAATGGGGA 1254 | || || | || ||||| || ||||||| ||||| | ||||| || | | || | Sbjct 667 TCCTCCGCAACCGCAAGAACCTCGCCGACGACGACTCCTACCGCCGAGAAGGCCTCGGCA 608 Query 1255 TCTGGCCGGACGATGAC 1271 |||| |||||| ||| Sbjct 607 TCTG---GGACGACGAC 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157727525737680