Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq515 113 1e-20 >seq515 Length=3970 Score = 113 bits (124), Expect = 1e-20 Identities = 266/394 (68%), Gaps = 11/394 (3%) Strand=Plus/Plus Query 21179 AAGCAGCGCCATGGGTTGAGCCTGCTGGTGGTGGACTACCTGCAGCTGCTGGAGAGCTCC 21238 |||||||| || || || | || | || | ||||||||||||||||| |||| | Sbjct 287 AAGCAGCGGCACGGCCTGCGTATGGTCGTCATCGACTACCTGCAGCTGCTCTCGAGCGGC 346 Query 21239 GGCAAGTCC---ACTCGCACCGAGGACGTCAGCGACATGTCCCGCCAGTGCAAGCTGCTG 21295 |||||| | ||| |||| ||||| || | ||||| ||| ||||| Sbjct 347 AAGAAGTCCGAGAGCCGCCAGCAGGAGGTCAGTGAGTTCTCCCGTGCCCTCAAACTGCTC 406 Query 21296 GCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAG 21355 ||| |||||| | | | || || |||| |||||||||||| ||||| | |||||| Sbjct 407 TCGAAGGAGCTCGATGTGCCGGTCATCGCGCTGTCGCAGCTGAACCGTGCGTCCGAGCAG 466 Query 21356 CG-GCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGA 21414 || |||| ||||| || || ||||||||||| || || ||| |||||||||| Sbjct 467 CGCGCCG-ACAAGATGCCCGCCATCAGCGACCTGCGCGAATCGGGTGCGCTCGAGCAGGA 525 Query 21415 CGCCGATGTGATCATGTTCGTGTACCGCGA--CGAGGTCTACCACCCGGATACCCAGTAC 21472 ||||| || | || | || ||||||| | || |||| | ||| | | | | Sbjct 526 TGCCGACATGGTGATCCTGCTGCACCGCGAGTCCAG--CTACGAGAAGGACAATCCGCGC 583 Query 21473 CGCGGCGTGGCTGAGTTGATCATCGCGAAGCACCGCAACGGCGAGCCAAGCACTGT-TCG 21531 ||||| ||| || | ||| | || ||||| || |||||| | |||| || || Sbjct 584 GCCGGCGAGGCCGACCTCATCCTGGCCAAGCAGCGAAACGGCCCCACCGGCACCGTCACG 643 Query 21532 GTGCGCGTTCCTGGGTAAGTACTCGCGATTCGAG 21565 || |||||||| ||| | |||||||| ||| || Sbjct 644 GT-CGCGTTCCAGGGCCACTACTCGCGCTTCCAG 676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157103552932380