Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3658 107 2e-18 >seq3658 Length=1447888 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | ||| | ||| || || || |||||||| ||||| ||||||||||||| Sbjct 43477 TTCCTCCTCTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCGG 43536 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| || | |||||| || || || || | | || ||||| || | Sbjct 43537 ACAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGTG 43596 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || ||||| || || || || | || | ||||| || | ||| | Sbjct 43597 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCAA 43656 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || |||| || || || || | || || || || || ||||| Sbjct 43657 CCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 43705 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| || | | ||| ||||| || || || ||||| || ||||||||||| Sbjct 42100 CTTACCAGCAAAGATGAGTCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTT 42159 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | |||||||| | ||| || || || |||| || || ||||| Sbjct 42160 GGCCTTCACATTCTCGATGGTGTCAGAGGCTTCGACCTCGAGTGTGATGGTCTTTCCGGT 42219 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | ||||| || || ||||||||| Sbjct 42220 GAGCGTTTTCACGAAAATCTGCATG 42244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396260675210190